3J9K | pdb_00003j9k

Structure of Dark apoptosome in complex with Dronc CARD domain


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AA [auth a]YkuDe3j9ka3 A: a/b three-layered sandwichesX: Cytidine deaminase-likeH: KorB C-terminal domainT: KorB C-terminal domainF: YkuDECOD (v294.1)
AA [auth a]SHQ1-like_CSe3j9ka1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Fibronectin type I module-likeT: Fibronectin type I moduleF: SHQ1-like_CSECOD (v294.1)
CYkuDe3j9kC3 A: a/b three-layered sandwichesX: Cytidine deaminase-likeH: KorB C-terminal domainT: KorB C-terminal domainF: YkuDECOD (v294.1)
CSHQ1-like_CSe3j9kC1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Fibronectin type I module-likeT: Fibronectin type I moduleF: SHQ1-like_CSECOD (v294.1)
CA [auth c]YkuDe3j9kc3 A: a/b three-layered sandwichesX: Cytidine deaminase-likeH: KorB C-terminal domainT: KorB C-terminal domainF: YkuDECOD (v294.1)
CA [auth c]SHQ1-like_CSe3j9kc1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Fibronectin type I module-likeT: Fibronectin type I moduleF: SHQ1-like_CSECOD (v294.1)
EYkuDe3j9kE3 A: a/b three-layered sandwichesX: Cytidine deaminase-likeH: KorB C-terminal domainT: KorB C-terminal domainF: YkuDECOD (v294.1)
ESHQ1-like_CSe3j9kE1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Fibronectin type I module-likeT: Fibronectin type I moduleF: SHQ1-like_CSECOD (v294.1)
EA [auth e]YkuDe3j9ke3 A: a/b three-layered sandwichesX: Cytidine deaminase-likeH: KorB C-terminal domainT: KorB C-terminal domainF: YkuDECOD (v294.1)
EA [auth e]SHQ1-like_CSe3j9ke1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Fibronectin type I module-likeT: Fibronectin type I moduleF: SHQ1-like_CSECOD (v294.1)
GYkuDe3j9kG3 A: a/b three-layered sandwichesX: Cytidine deaminase-likeH: KorB C-terminal domainT: KorB C-terminal domainF: YkuDECOD (v294.1)
GSHQ1-like_CSe3j9kG1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Fibronectin type I module-likeT: Fibronectin type I moduleF: SHQ1-like_CSECOD (v294.1)
IYkuDe3j9kI3 A: a/b three-layered sandwichesX: Cytidine deaminase-likeH: KorB C-terminal domainT: KorB C-terminal domainF: YkuDECOD (v294.1)
ISHQ1-like_CSe3j9kI1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Fibronectin type I module-likeT: Fibronectin type I moduleF: SHQ1-like_CSECOD (v294.1)
KYkuDe3j9kK3 A: a/b three-layered sandwichesX: Cytidine deaminase-likeH: KorB C-terminal domainT: KorB C-terminal domainF: YkuDECOD (v294.1)
KSHQ1-like_CSe3j9kK1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Fibronectin type I module-likeT: Fibronectin type I moduleF: SHQ1-like_CSECOD (v294.1)
MYkuDe3j9kM3 A: a/b three-layered sandwichesX: Cytidine deaminase-likeH: KorB C-terminal domainT: KorB C-terminal domainF: YkuDECOD (v294.1)
MSHQ1-like_CSe3j9kM1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Fibronectin type I module-likeT: Fibronectin type I moduleF: SHQ1-like_CSECOD (v294.1)
OYkuDe3j9kO3 A: a/b three-layered sandwichesX: Cytidine deaminase-likeH: KorB C-terminal domainT: KorB C-terminal domainF: YkuDECOD (v294.1)
OSHQ1-like_CSe3j9kO1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Fibronectin type I module-likeT: Fibronectin type I moduleF: SHQ1-like_CSECOD (v294.1)
QYkuDe3j9kQ3 A: a/b three-layered sandwichesX: Cytidine deaminase-likeH: KorB C-terminal domainT: KorB C-terminal domainF: YkuDECOD (v294.1)
QSHQ1-like_CSe3j9kQ1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Fibronectin type I module-likeT: Fibronectin type I moduleF: SHQ1-like_CSECOD (v294.1)
SYkuDe3j9kS3 A: a/b three-layered sandwichesX: Cytidine deaminase-likeH: KorB C-terminal domainT: KorB C-terminal domainF: YkuDECOD (v294.1)
SSHQ1-like_CSe3j9kS1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Fibronectin type I module-likeT: Fibronectin type I moduleF: SHQ1-like_CSECOD (v294.1)
UYkuDe3j9kU3 A: a/b three-layered sandwichesX: Cytidine deaminase-likeH: KorB C-terminal domainT: KorB C-terminal domainF: YkuDECOD (v294.1)
USHQ1-like_CSe3j9kU1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Fibronectin type I module-likeT: Fibronectin type I moduleF: SHQ1-like_CSECOD (v294.1)
WYkuDe3j9kW3 A: a/b three-layered sandwichesX: Cytidine deaminase-likeH: KorB C-terminal domainT: KorB C-terminal domainF: YkuDECOD (v294.1)
WSHQ1-like_CSe3j9kW1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Fibronectin type I module-likeT: Fibronectin type I moduleF: SHQ1-like_CSECOD (v294.1)
YYkuDe3j9kY3 A: a/b three-layered sandwichesX: Cytidine deaminase-likeH: KorB C-terminal domainT: KorB C-terminal domainF: YkuDECOD (v294.1)
YSHQ1-like_CSe3j9kY1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Fibronectin type I module-likeT: Fibronectin type I moduleF: SHQ1-like_CSECOD (v294.1)
BDockerin_1e3j9kB1 A: a/b three-layered sandwichesX: Ribonuclease H-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Dockerin_1ECOD (v294.1)
BA [auth b]Dockerin_1e3j9kb1 A: a/b three-layered sandwichesX: Ribonuclease H-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Dockerin_1ECOD (v294.1)
DDockerin_1e3j9kD1 A: a/b three-layered sandwichesX: Ribonuclease H-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Dockerin_1ECOD (v294.1)
DA [auth d]Dockerin_1e3j9kd1 A: a/b three-layered sandwichesX: Ribonuclease H-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Dockerin_1ECOD (v294.1)
FDockerin_1e3j9kF1 A: a/b three-layered sandwichesX: Ribonuclease H-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Dockerin_1ECOD (v294.1)
FA [auth f]Dockerin_1e3j9kf1 A: a/b three-layered sandwichesX: Ribonuclease H-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Dockerin_1ECOD (v294.1)
HDockerin_1e3j9kH1 A: a/b three-layered sandwichesX: Ribonuclease H-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Dockerin_1ECOD (v294.1)
JDockerin_1e3j9kJ1 A: a/b three-layered sandwichesX: Ribonuclease H-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Dockerin_1ECOD (v294.1)
LDockerin_1e3j9kL1 A: a/b three-layered sandwichesX: Ribonuclease H-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Dockerin_1ECOD (v294.1)
NDockerin_1e3j9kN1 A: a/b three-layered sandwichesX: Ribonuclease H-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Dockerin_1ECOD (v294.1)
PDockerin_1e3j9kP1 A: a/b three-layered sandwichesX: Ribonuclease H-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Dockerin_1ECOD (v294.1)
RDockerin_1e3j9kR1 A: a/b three-layered sandwichesX: Ribonuclease H-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Dockerin_1ECOD (v294.1)
TDockerin_1e3j9kT1 A: a/b three-layered sandwichesX: Ribonuclease H-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Dockerin_1ECOD (v294.1)
VDockerin_1e3j9kV1 A: a/b three-layered sandwichesX: Ribonuclease H-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Dockerin_1ECOD (v294.1)
XDockerin_1e3j9kX1 A: a/b three-layered sandwichesX: Ribonuclease H-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Dockerin_1ECOD (v294.1)
ZDockerin_1e3j9kZ1 A: a/b three-layered sandwichesX: Ribonuclease H-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Dockerin_1ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00931NB-ARC domain (NB-ARC)NB-ARC domainDomain
PF22164Dark, winged-helix domain (WHD_Dark)Dark, winged-helix domainThis entry represents a WH-like present in a set of Dark (Drosophila Apaf-1-related killer) proteins in arthropods. Dark protein is part of the apoptosome complex and plays a key role in procaspases activation and apoptosis [1,2]. Domain
PF17908APAF-1 helical domain (APAF1_C)APAF-1 helical domainThis domain represents the C-terminal alpha helical domain of the apoptotic Apaf-1 protein. Domain
PF22080Dark, CARD domain (Dark_CARD)Dark, CARD domainThis entry represents a caspase recruitment domain (CARD) present in a set of Dark (Drosophila Apaf-1-related killer) proteins in arthropods. Dark protein is part of the apoptosome complex and plays a key role in procaspases activation and apoptosis ...This entry represents a caspase recruitment domain (CARD) present in a set of Dark (Drosophila Apaf-1-related killer) proteins in arthropods. Dark protein is part of the apoptosome complex and plays a key role in procaspases activation and apoptosis [1]. This N-terminal CARD in Dark belongs to the alpha-helical Death Domain superfamily and interacts with the N-terminal CARD of Dronc protein [2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Apaf-1 related killer DARK
Caspase Nc

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR054042Dark, winged-helix domainDomain
IPR041452APAF-1 helical domainDomain
IPR054304Dark, CARD domainDomain
IPR002182NB-ARCDomain
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR001680WD40 repeatRepeat
IPR001309Peptidase C14, p20 domainDomain
IPR011600Peptidase C14, caspase domainDomain
IPR015917Peptidase C14A, caspase catalytic domainDomain
IPR011029Death-like domain superfamilyHomologous Superfamily
IPR029030Caspase-like domain superfamilyHomologous Superfamily
IPR033139Peptidase family C14A, cysteine active siteActive Site
IPR002138Peptidase C14, caspase non-catalytic subunit p10Domain
IPR002398Peptidase C14 familyFamily