3J0Q | pdb_00003j0q

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Q [auth k]SCOP2B SuperfamilyRL5-like 8099392 3001709 SCOP2B (2022-06-29)
O [auth B]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like 8098448 3001911 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth L]Rase3j0qL1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: RasECOD (v294.1)
H [auth S]Ribosomal_S17,Ribosomal_S17_Ne3j0qS1 A: a/b three-layered sandwichesX: OB-foldH: Nucleic acid-binding proteinT: Nucleic acid-binding proteinF: Ribosomal_S17,Ribosomal_S17_NECOD (v294.1)
Q [auth k]CoV_NSP4_Ce3j0qk2 A: a/b three-layered sandwichesX: DEATH domainH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: CoV_NSP4_CECOD (v294.1)
P [auth J]Rase3j0qJ1 A: a/b three-layered sandwichesX: Lipocalins/StreptavidinH: Zn-dependent exopeptidasesT: Zn-dependent exopeptidasesF: RasECOD (v294.1)
O [auth B]SapB_2,SapB_1e3j0qB3 A: a/b three-layered sandwichesX: Fusion glycoprotein F2H: HTHT: winged helix domainF: SapB_2,SapB_1ECOD (v294.1)
J [auth X]Ribosomal_S30e3j0qX1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: Type II ABC importer transmembrane domain foldT: Type II ABC importer transmembrane domain foldF: Ribosomal_S30ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
O [auth B]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth L]Ribosomal protein S23---
H [auth S]Ribosomal protein S15---
G [auth h]40S ribosomal RNA fragment---
F [auth f]40S ribosomal RNA fragment---
E [auth G]40S ribosomal RNA fragment---
D [auth g]40S ribosomal RNA fragment---
C [auth d]40S ribosomal RNA fragment---
U [auth w]mRNA fragment---
B [auth c]40S ribosomal RNA fragment---
S [auth y]mRNA fragment---
R [auth Y],
T [auth W]		tRNA---
Q [auth k]Ribosomal protein L11
P [auth J]Ribosomal protein L10---
O [auth B]Ribosomal protein L10a
N [auth 7]60S ribosomal RNA fragment---
M [auth 9]60S ribosomal RNA fragment---
L [auth 3]60S ribosomal RNA fragment---
K [auth 2]60S ribosomal RNA fragment---
J [auth X]Ribosomal protein S30---
A [auth a]40S ribosomal RNA fragment---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
Q [auth k]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
Q [auth k]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
Q [auth k]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
Q [auth k]IPR057266Large ribosomal subunit protein uL5, eukaryota/archaeaFamily
Q [auth k]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
Q [auth k]IPR002132Large ribosomal subunit protein uL5Family
O [auth B]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
O [auth B]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
O [auth B]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
O [auth B]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
O [auth B]IPR002143Large ribosomal subunit protein uL1Family
O [auth B]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily