3J0P | pdb_00003j0p

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
N [auth B]	SCOP2B Superfamily	Ribosomal protein L1p/L10e-like	8098448	3001911	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I [auth L]	Ras	e3j0pL1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Ras	ECOD (v294.1)
H [auth S]	Ribosomal_S17,Ribosomal_S17_N	e3j0pS1	A: a/b three-layered sandwiches	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleic acid-binding protein	F: Ribosomal_S17,Ribosomal_S17_N	ECOD (v294.1)
N [auth B]	SapB_2,SapB_1	e3j0pB3	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: HTH	T: winged helix domain	F: SapB_2,SapB_1	ECOD (v294.1)
J [auth X]	Ribosomal_S30	e3j0pX1	A: a/b three-layered sandwiches	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F: Ribosomal_S30	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
N [auth B]	PF00687	Ribosomal protein L1p/L10e family (Ribosomal_L1)	Ribosomal protein L1p/L10e family	This family includes prokaryotic L1 and eukaryotic L10.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth L]	Ribosomal protein S23	-	-	-
H [auth S]	Ribosomal protein S15	-	-	-
G [auth h]	40S ribosomal RNA fragment	-	-	-
F [auth f]	40S ribosomal RNA fragment	-	-	-
E [auth G]	40S ribosomal RNA fragment	-	-	-
D [auth g]	40S ribosomal RNA fragment	-	-	-
C [auth d]	40S ribosomal RNA fragment	-	-	-
B [auth c]	40S ribosomal RNA fragment	-	-	-
R [auth w]	mRNA fragment	-	-	-
Q [auth W]	tRNA	-	-	-
P [auth y]	mRNA fragment	-	-	-
O [auth Y]	tRNA	-	-	-
N [auth B]	Ribosomal protein L10a	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process establishment of organelle localization cellular localization ribonucleoprotein complex biogenesis primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process establishment of organelle localization cellular localization ribonucleoprotein complex biogenesis nucleocytoplasmic transport transport nuclear transport ribosomal subunit export from nucleus ribosomal large subunit export from nucleus intracellular transport establishment of localization cellular component biogenesis localization ribosome biogenesis organelle localization establishment of localization in cell cellular component organization or biogenesis nuclear export ribosome localization	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome large ribosomal subunit
M [auth 7]	60S ribosomal RNA fragment	-	-	-
L [auth 3]	60S ribosomal RNA fragment	-	-	-
K [auth 2]	60S ribosomal RNA fragment	-	-	-
J [auth X]	Ribosomal protein S30	-	-	-
A [auth a]	40S ribosomal RNA fragment	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
N [auth B]	IPR050257	Large ribosomal subunit protein eL8/uL1-like	Family
N [auth B]	IPR023673	Large ribosomal subunit protein uL1, conserved site	Conserved Site
N [auth B]	IPR016095	Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domain	Homologous Superfamily
N [auth B]	IPR023674	Ribosomal protein uL1-like	Homologous Superfamily
N [auth B]	IPR002143	Large ribosomal subunit protein uL1	Family
N [auth B]	IPR028364	Ribosomal protein uL1/ribosomal biogenesis protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.