3J09

High resolution helical reconstruction of the bacterial p-type ATPase copper transporter CopA

Present annotations:

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Product Annotation
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	E1-E2_ATPase_N	e3j09A3	A: beta sandwiches	X: jelly-roll	H: Calcium ATPase, transduction domain A (From Topology)	T: Calcium ATPase, transduction domain A	F: E1-E2_ATPase_N	ECOD (1.6)
A	E1-E2_ATPase_C	e3j09A4	A: alpha bundles	X: Calcium ATPase transmembrane domain-related (From Homology)	H: Calcium ATPase transmembrane domain-related	T: Copper efflux ATPase transmembrane domain	F: E1-E2_ATPase_C	ECOD (1.6)
A	HMA	e3j09A2	A: a+b two layers	X: Alpha-beta plaits	H: HMA-related	T: HMA, heavy metal-associated domain	F: HMA	ECOD (1.6)
A	P-type_ATPase_Cu-like	e3j09A5	A: a+b complex topology	X: Metal cation-transporting ATPase, ATP-binding domain (From Topology)	H: Metal cation-transporting ATPase, ATP-binding domain (From Topology)	T: Metal cation-transporting ATPase, ATP-binding domain	F: P-type_ATPase_Cu-like	ECOD (1.6)
A	Hydrolase_3_1	e3j09A1	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: Hydrolase_3_1	ECOD (1.6)
B	E1-E2_ATPase_N	e3j09B6	A: beta sandwiches	X: jelly-roll	H: Calcium ATPase, transduction domain A (From Topology)	T: Calcium ATPase, transduction domain A	F: E1-E2_ATPase_N	ECOD (1.6)
B	E1-E2_ATPase_C	e3j09B4	A: alpha bundles	X: Calcium ATPase transmembrane domain-related (From Homology)	H: Calcium ATPase transmembrane domain-related	T: Copper efflux ATPase transmembrane domain	F: E1-E2_ATPase_C	ECOD (1.6)
B	HMA	e3j09B7	A: a+b two layers	X: Alpha-beta plaits	H: HMA-related	T: HMA, heavy metal-associated domain	F: HMA	ECOD (1.6)
B	P-type_ATPase_Cu-like	e3j09B5	A: a+b complex topology	X: Metal cation-transporting ATPase, ATP-binding domain (From Topology)	H: Metal cation-transporting ATPase, ATP-binding domain (From Topology)	T: Metal cation-transporting ATPase, ATP-binding domain	F: P-type_ATPase_Cu-like	ECOD (1.6)
B	Hydrolase_3_1	e3j09B8	A: a/b three-layered sandwiches	X: HAD domain-like	H: HAD domain-related	T: HAD-like	F: Hydrolase_3_1	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Identifier	Description	Comments	Source
A, B	PF00403	Heavy-metal-associated domain (HMA)	Heavy-metal-associated domain	-	Domain
A, B	PF00702	haloacid dehalogenase-like hydrolase (Hydrolase)	haloacid dehalogenase-like hydrolase	This family is structurally different from the alpha/beta hydrolase family (Pfam:PF00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted fo ...	This family is structurally different from the alpha/beta hydrolase family (Pfam:PF00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of Swiss:P24069. The rest of the fold is composed of the core alpha/beta domain [1]. Those members with the characteristic DxD triad at the N-terminus are probably phosphatidylglycerolphosphate (PGP) phosphatases involved in cardiolipin biosynthesis in the mitochondria [2].	Domain
A, B	PF00122	E1-E2 ATPase (E1-E2_ATPase)	E1-E2 ATPase	-	Family

Gene Product Annotation Gene Product Annotation

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	copper-exporting P-type ATPase A	transporter activity cation transmembrane transporter activity ion transmembrane transporter activity inorganic molecular entity transmembrane transporter activity primary active transmembrane transporter activity ATPase-coupled cation transmembrane transporter activity active transmembrane transporter activity active ion transmembrane transporter activity transmembrane transporter activity inorganic cation transmembrane transporter activity ATPase-coupled transmembrane transporter activity ATP-dependent activity binding copper ion binding ion binding cation binding metal ion binding transition metal ion binding protein binding identical protein binding		membrane integral component of membrane intrinsic component of membrane cellular anatomical entity plasma membrane cell periphery

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B	OPM	Transmembrane	Alpha-helical polytopic	P-type ATPase (P-ATPase)	P-ATPase

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B	MemProtMD	Annotated as membrane protein by MemProtMD

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.