3IWP | pdb_00003iwp

Crystal structure of human copper homeostasis protein CutC

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3iwpa_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	CutC-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d3iwpc_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	CutC-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d3iwpd_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	CutC-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d3iwpe_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	CutC-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d3iwpf_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	CutC-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
H	d3iwph_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	CutC-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
J	d3iwpj_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	CutC-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
K	d3iwpk_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	CutC-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
L	d3iwpl_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	CutC-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
I	d3iwpi_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	CutC-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G	d3iwpg_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	CutC-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d3iwpb_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	CutC-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	CutC/MfnB-like	8082935	3000639	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	CutC/MfnB-like	8082935	3000639	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	CutC/MfnB-like	8082935	3000639	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	CutC/MfnB-like	8082935	3000639	SCOP2B (2022-06-29)
F	SCOP2 Family	CutC-like	8082934	4001982	SCOP2 (2022-06-29)
F	SCOP2 Superfamily	CutC/MfnB-like	8082935	3000639	SCOP2 (2022-06-29)
H	SCOP2B Superfamily	CutC/MfnB-like	8082935	3000639	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	CutC/MfnB-like	8082935	3000639	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	CutC/MfnB-like	8082935	3000639	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	CutC/MfnB-like	8082935	3000639	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	CutC/MfnB-like	8082935	3000639	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	CutC/MfnB-like	8082935	3000639	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CutC/MfnB-like	8082935	3000639	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	RbsD_FucU	e3iwpA1	A: a/b three-layered sandwiches	X: Cystatin-like	H: NTF2-like	T: NTF2-like	F: RbsD_FucU	ECOD (v294.1)
C	MIF	e3iwpC1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF	ECOD (v294.1)
D	MIF	e3iwpD1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF	ECOD (v294.1)
E	MIF	e3iwpE1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF	ECOD (v294.1)
F	MIF	e3iwpF1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF	ECOD (v294.1)
H	MIF	e3iwpH1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF	ECOD (v294.1)
J	MIF	e3iwpJ1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF	ECOD (v294.1)
K	MIF	e3iwpK1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF	ECOD (v294.1)
L	MIF	e3iwpL1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF	ECOD (v294.1)
I	MIF	e3iwpI1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF	ECOD (v294.1)
G	MIF	e3iwpG1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF	ECOD (v294.1)
B	MIF	e3iwpB1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.20.380	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Copper homeostasis (CutC) domain	CATH (4.3.0)
C	3.20.20.380	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Copper homeostasis (CutC) domain	CATH (4.3.0)
D	3.20.20.380	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Copper homeostasis (CutC) domain	CATH (4.3.0)
E	3.20.20.380	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Copper homeostasis (CutC) domain	CATH (4.3.0)
F	3.20.20.380	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Copper homeostasis (CutC) domain	CATH (4.3.0)
H	3.20.20.380	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Copper homeostasis (CutC) domain	CATH (4.3.0)
J	3.20.20.380	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Copper homeostasis (CutC) domain	CATH (4.3.0)
K	3.20.20.380	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Copper homeostasis (CutC) domain	CATH (4.3.0)
L	3.20.20.380	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Copper homeostasis (CutC) domain	CATH (4.3.0)
I	3.20.20.380	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Copper homeostasis (CutC) domain	CATH (4.3.0)
G	3.20.20.380	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Copper homeostasis (CutC) domain	CATH (4.3.0)
B	3.20.20.380	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Copper homeostasis (CutC) domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF03932	CutC family (CutC)	CutC family	Copper homeostasis protein CutC was originally thought to be involved in copper tolerance in Escherichia coli, as mutation in the corresponding gene lead to an increased copper sensitivity [1]. However, this phenotype has been later reported to depen ...	Copper homeostasis protein CutC was originally thought to be involved in copper tolerance in Escherichia coli, as mutation in the corresponding gene lead to an increased copper sensitivity [1]. However, this phenotype has been later reported to depend on the levels of he mRNA-interfering complementary RNA regulator MicL, which is transcribed from a promoter located within the coding sequence of the cutC gene in enterobacteria [2]. In the plant pathogen Xylella fastidiosa, this protein has been reported as specific for copper efflux [3]. The structure of this protein in the bacteria Shigella flexneri showed a monomer structure that adopts a common TIM beta/alpha barrel with eight beta strands surrounded by eight alpha-helices [4]. The human homologue of this protein, whose structure showed a potential copper-binding site, has an important role in intracellular copper homeostasis [5,6].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Copper homeostasis protein cutC homolog	cation binding transition metal ion binding copper ion binding ion binding binding metal ion binding small molecule binding	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein tetramerization protein-containing complex assembly cellular process cellular component organization or biogenesis inorganic ion homeostasis chemical homeostasis homeostatic process monoatomic ion homeostasis copper ion homeostasis cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein tetramerization protein-containing complex assembly cellular process cellular component organization or biogenesis inorganic ion homeostasis chemical homeostasis homeostatic process monoatomic ion homeostasis copper ion homeostasis monoatomic cation homeostasis localization transport copper ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle membraneless organelle nuclear lumen nucleoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR005627	CutC-like	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036822	CutC-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Pharos: Q9NTM9	acute myeloid leukemia malignant mesothelioma osteosarcoma breast fibroadenoma Malignant neoplasm of breast pituitary cancer ductal breast carcinoma in situ myopathy

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.