3IUO
The Crystal Structure of the C-terminal domain of the ATP-dependent DNA helicase RecQ from Porphyromonas gingivalis to 1.6A
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | HTH_40_like | e3iuoA2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: HTH_40_like | ECOD (1.6) |
A | Winged_RecQ | e3iuoA1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Winged_RecQ | ECOD (1.6) |
B | HTH_40_like | e3iuoB2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: HTH_40_like | ECOD (1.6) |
B | Winged_RecQ | e3iuoB1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Winged_RecQ | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.1390 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | ATP-dependent DNA helicase RecQ | CATH (4.3.0) |
B | 1.10.10.1390 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | ATP-dependent DNA helicase RecQ | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21220 | RecQ-1-like, helix-turn-helix domain (RecQ-1-like_HTH) | RecQ-1-like, helix-turn-helix domain | This domain is found in a group of bacterial DNA helicases, including RecQ-1 from Porphyromonas gingivalis, which shows an all-helical structure [1]. This entry represents the helix-turn-helix (HTH) domain. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006293 | DNA helicase, ATP-dependent, RecQ type, bacterial | Family | |
IPR002121 | HRDC domain | Domain | |
IPR032284 | ATP-dependent DNA helicase RecQ, zinc-binding domain | Domain | |
IPR011545 | DEAD/DEAH box helicase domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR010997 | HRDC-like superfamily | Homologous Superfamily | |
IPR001650 | Helicase, C-terminal domain-like | Domain | |
IPR018982 | RQC domain | Domain | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR044876 | HRDC domain superfamily | Homologous Superfamily | |
IPR048671 | RecQ-1-like, helix-turn-helix domain | Domain | |
IPR004589 | DNA helicase, ATP-dependent, RecQ type | Family |