3IRB | pdb_00003irb

Crystal structure of protein with unknown function from DUF35 family (13815350) from SULFOLOBUS SOLFATARICUS at 1.80 A resolution


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyNop10-like SnoRNP Znf-like 8047299 3000486 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyNucleic acid-binding proteins 8034083 3000135 SCOP2B (2022-06-29)
ASCOP2 FamilyPhlB-like 8021703 4001746 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyNucleic acid-binding proteins 8034083 3000135 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyNop10-like SnoRNP Znf-like 8047299 3000486 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BOB_aCoA_assoce3irbB1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: OB_aCoA_assocECOD (1.6)
BDUF35_Ne3irbB2 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: DUF35_NECOD (1.6)
AOB_aCoA_assoce3irbA1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: OB_aCoA_assocECOD (1.6)
ADUF35_Ne3irbA2 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: DUF35_NECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF12172ChsH2, rubredoxin-like zinc ribbon domain (zf-ChsH2)ChsH2, rubredoxin-like zinc ribbon domainThis domain is found at the C-terminal end of the probable enoyl -CoA hydratase alpha subunit from Thermomonospora curvata (ChsH2) and similar archaeal and bacterial proteins. ChsH2 is likely to be involved in bile acid degradation. The C-terminal re ...This domain is found at the C-terminal end of the probable enoyl -CoA hydratase alpha subunit from Thermomonospora curvata (ChsH2) and similar archaeal and bacterial proteins. ChsH2 is likely to be involved in bile acid degradation. The C-terminal region of this protein is organised into two domains: an N-terminal zinc finger domain with a three-stranded antiparallel beta-sheet and an N-terminal alpha-helix (this entry) and a OB-fold domain (Pfam:PF01796) [5]. The domain is duplicated in some members like Swiss:O53566 from M.tuberculosis. The structure of Swiss:Q97WQ4 from Saccharolobus solfataricus reveals two long N-terminal helices followed by a rubredoxin -like zinc ribbon domain represented in this family and a C-terminal OB fold domain [1]. Zinc is chelated by the four conserved cysteines in the alignment.
Domain
A, B
PF01796ChsH2, C-terminal OB-fold domain (OB_ChsH2_C)ChsH2, C-terminal OB-fold domainThis domain is found at the C-terminal end of the probable enoyl -CoA hydratase alpha subunit from Thermomonospora curvata (ChsH2) and similar archaeal and bacterial proteins. ChsH2 is likely to be involved in bile acid degradation. The C-terminal re ...This domain is found at the C-terminal end of the probable enoyl -CoA hydratase alpha subunit from Thermomonospora curvata (ChsH2) and similar archaeal and bacterial proteins. ChsH2 is likely to be involved in bile acid degradation. The C-terminal region of this protein is organised into two domains: an N-terminal zinc finger domain (Pfam:PF12172) and an OB-fold domain (this entry) that consists of a five-stranded beta-barrel [6]. This domain is also found in 3-oxo-4,17- pregnadiene-20-carboxyl-CoA hydratase alpha subunit from Mycobacterium tuberculosis that is involved in cholesterol side chain degradation [3]. It is also found in Methanothermococcus thermolithotrophicus HMGCS, an enzyme complex comprising the thiolase and 3-hydroxy-3-methylglutaryl (HMG)-CoA synthase, that catalyses the second reaction in the mevalonate pathway-the exergonic condensation of acetoacetyl-CoA and acetyl-CoA to HMG-CoA [4].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
uncharacterized protein from DUF35 family - -