3HZJ | pdb_00003hzj

Crystal structure of the RabGAP domain of the RABGAP1L protein

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	RabGAP-TBC_N	e3hzjC1	A: alpha arrays	X: Ypt/Rab-GAP domain of gyp1p-like	H: Ypt/Rab-GAP domain of gyp1p (From Topology)	T: Ypt/Rab-GAP domain of gyp1p	F: RabGAP-TBC_N	ECOD (1.6)
C	RabGAP-TBC_C_1	e3hzjC2	A: alpha arrays	X: Ypt/Rab-GAP domain of gyp1p-like	H: Ypt/Rab-GAP domain of gyp1p (From Topology)	T: Ypt/Rab-GAP domain of gyp1p	F: RabGAP-TBC_C_1	ECOD (1.6)
B	RabGAP-TBC_N	e3hzjB7	A: alpha arrays	X: Ypt/Rab-GAP domain of gyp1p-like	H: Ypt/Rab-GAP domain of gyp1p (From Topology)	T: Ypt/Rab-GAP domain of gyp1p	F: RabGAP-TBC_N	ECOD (1.6)
B	RabGAP-TBC_C_1	e3hzjB8	A: alpha arrays	X: Ypt/Rab-GAP domain of gyp1p-like	H: Ypt/Rab-GAP domain of gyp1p (From Topology)	T: Ypt/Rab-GAP domain of gyp1p	F: RabGAP-TBC_C_1	ECOD (1.6)
A	RabGAP-TBC_N	e3hzjA3	A: alpha arrays	X: Ypt/Rab-GAP domain of gyp1p-like	H: Ypt/Rab-GAP domain of gyp1p (From Topology)	T: Ypt/Rab-GAP domain of gyp1p	F: RabGAP-TBC_N	ECOD (1.6)
A	RabGAP-TBC_C_1	e3hzjA4	A: alpha arrays	X: Ypt/Rab-GAP domain of gyp1p-like	H: Ypt/Rab-GAP domain of gyp1p (From Topology)	T: Ypt/Rab-GAP domain of gyp1p	F: RabGAP-TBC_C_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	1.10.10.750	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Ypt/Rab-GAP domain of gyp1p, domain 1	CATH (4.3.0)
C	1.10.8.270	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
C	1.10.472.80	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
B	1.10.8.270	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
B	1.10.472.80	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
A	1.10.10.750	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Ypt/Rab-GAP domain of gyp1p, domain 1	CATH (4.3.0)
A	1.10.8.270	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
A	1.10.472.80	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF00566	Rab-GTPase-TBC domain (RabGAP-TBC)	Rab-GTPase-TBC domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	RAB GTPase-activating protein 1-like	small GTPase binding protein binding binding enzyme binding GTPase binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity	regulation of localization localization regulation of biological process regulation of protein localization macromolecule localization biological regulation intracellular protein localization import into cell transport cellular process endocytosis establishment of localization vesicle-mediated transport establishment of protein localization regulation of localization localization regulation of biological process regulation of protein localization macromolecule localization biological regulation intracellular protein localization import into cell transport cellular process endocytosis establishment of localization vesicle-mediated transport establishment of protein localization nitrogen compound transport protein transport	membrane-bounded organelle intracellular anatomical structure early endosome endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle cytoplasm vesicle Golgi apparatus membrane-bounded organelle intracellular anatomical structure early endosome endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle cytoplasm vesicle Golgi apparatus nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR022164	Kinesin-like	Domain
A, B, C	IPR006020	PTB/PI domain	Domain
A, B, C	IPR050302	Rab GTPase-activating TBC domain-containing protein	Family
A, B, C	IPR035969	Rab-GAP-TBC domain superfamily	Homologous Superfamily
A, B, C	IPR011993	PH-like domain superfamily	Homologous Superfamily
A, B, C	IPR000195	Rab-GAP-TBC domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C	Pharos: Q5R372	Liver Cirrhosis, Experimental pilocytic astrocytoma spina bifida ulcerative colitis acute myeloid leukemia cystic fibrosis glioblastoma invasive ductal breast carcinoma malignant ependymoma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm psoriasis subependymal giant cell astrocytoma attention deficit hyperactivity disorder, inattentive type dermatomyositis Liver Cirrhosis, Experimental pilocytic astrocytoma spina bifida ulcerative colitis acute myeloid leukemia cystic fibrosis glioblastoma invasive ductal breast carcinoma malignant ependymoma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm psoriasis subependymal giant cell astrocytoma attention deficit hyperactivity disorder, inattentive type dermatomyositis head and neck cancer malignant glioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Sjogren syndrome tuberculosis atypical teratoid rhabdoid tumor endogenous depression interstitial cystitis lung cancer malignant mesothelioma ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.