Annotations: 3HSA

Crystal structure of pleckstrin homology domain (YP_926556.1) from SHEWANELLA AMAZONENSIS SB2B at 1.99 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d3hsae_	All beta proteins	PH domain-like barrel	PH domain-like	BPHL domain	automated matches	(Shewanella amazonensis SB2B ) [TaxId: 326297 ],	SCOPe (2.08)
D	d3hsad_	All beta proteins	PH domain-like barrel	PH domain-like	BPHL domain	automated matches	(Shewanella amazonensis SB2B ) [TaxId: 326297 ],	SCOPe (2.08)
C	d3hsac_	All beta proteins	PH domain-like barrel	PH domain-like	BPHL domain	automated matches	(Shewanella amazonensis SB2B ) [TaxId: 326297 ],	SCOPe (2.08)
B	d3hsab_	All beta proteins	PH domain-like barrel	PH domain-like	BPHL domain	automated matches	(Shewanella amazonensis SB2B ) [TaxId: 326297 ],	SCOPe (2.08)
A	d3hsaa_	All beta proteins	PH domain-like barrel	PH domain-like	BPHL domain	automated matches	(Shewanella amazonensis SB2B ) [TaxId: 326297 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	PH domain-like	8059868	3000134	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PH domain-like	8059868	3000134	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PH domain-like	8059868	3000134	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PH domain-like	8059868	3000134	SCOP2B (2022-06-29)
A	SCOP2 Family	BPHL domain	8059867	4001832	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PH domain-like	8059868	3000134	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	YgbB	e3hsaE1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295.2)
D	YgbB	e3hsaD1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295.2)
C	YgbB	e3hsaC1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295.2)
B	YgbB	e3hsaB1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: YgbB	ECOD (v295.2)
A	V-set	e3hsaA1	A: alpha arrays	X: Alpha-beta plaits	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	2.30.29.50	Mainly Beta	Roll	PH-domain like	Bacterial Pleckstrin homology domain	CATH (4.3.0)
D	2.30.29.50	Mainly Beta	Roll	PH-domain like	Bacterial Pleckstrin homology domain	CATH (4.3.0)
C	2.30.29.50	Mainly Beta	Roll	PH-domain like	Bacterial Pleckstrin homology domain	CATH (4.3.0)
B	2.30.29.50	Mainly Beta	Roll	PH-domain like	Bacterial Pleckstrin homology domain	CATH (4.3.0)
A	2.30.29.50	Mainly Beta	Roll	PH-domain like	Bacterial Pleckstrin homology domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E	PF08000	Bacterial PH domain (bPH_1)	Bacterial PH domain	This family contains many bacterial hypothetical proteins. The structures of Swiss:A1SD03, PDB:3hsa, and Swiss:A3QB43, PDB:3dcx, show similarities to the PH or pleckstrin homology domain. First evidence of PH-like domains in bacteria suggests role in ...	This family contains many bacterial hypothetical proteins. The structures of Swiss:A1SD03, PDB:3hsa, and Swiss:A3QB43, PDB:3dcx, show similarities to the PH or pleckstrin homology domain. First evidence of PH-like domains in bacteria suggests role in cell envelope stress response [1].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR012544	Bacterial Pleckstrin homology domain	Domain
A, B, C, D, E	IPR037063	Bacterial Pleckstrin homology domain superfamily	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D, E	MLY	Parent Component: LYS : AA0075 : N6,N6-dimethyl-L-lysine MOD:00084
A, B, C, D, E	MSE	Parent Component: MET : AA0075

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.