3HOT
Crystal structure of the Mos1 mariner paired end complex with Mn
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF13412 | e3hotA9 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF13412 | ECOD (1.6) |
A | PF17906 | e3hotA7 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF17906 | ECOD (1.6) |
A | PF01359 | e3hotA8 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF01359 | ECOD (1.6) |
B | PF13412 | e3hotB9 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF13412 | ECOD (1.6) |
B | PF17906 | e3hotB7 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF17906 | ECOD (1.6) |
B | PF01359 | e3hotB8 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF01359 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.1450 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
A | 3.30.420.10 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
B | 1.10.10.1450 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
B | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
B | 3.30.420.10 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17906 | HTH domain in Mos1 transposase (HTH_48) | HTH domain in Mos1 transposase | The N-terminal domain of the Mos1 Mariner transposase comprises two HTH domains [1]. This HTH domain binds in the DNA major groove to the transposons inverted repeats. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Transposable element mariner, complete cds | ||||
Mos1 NTS inverted repeat DNA | - | - | - | |
Mos1 TS inverted repeat DNA | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036397 | Ribonuclease H superfamily | Homologous Superfamily | |
IPR041426 | Mos1 transposase, HTH domain | Domain | |
IPR001888 | Transposase, type 1 | Family | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |