3HM0 | pdb_00003hm0

Crystal Structure of Probable Thioesterase from Bartonella henselae

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d3hm0d_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	Rochalimaea henselae (Bartonella henselae ) [TaxId: 38323 ],	SCOPe (2.08)
C	d3hm0c_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	Rochalimaea henselae (Bartonella henselae ) [TaxId: 38323 ],	SCOPe (2.08)
B	d3hm0b_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	Rochalimaea henselae (Bartonella henselae ) [TaxId: 38323 ],	SCOPe (2.08)
A	d3hm0a_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	Rochalimaea henselae (Bartonella henselae ) [TaxId: 38323 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8075204	3000149	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8075204	3000149	SCOP2B (2022-06-29)
B	SCOP2 Family	4HBT-like	8075203	4001116	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8075204	3000149	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8075204	3000149	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Spt5-NGN	e3hm0D1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (v294.1)
C	Spt5-NGN	e3hm0C1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (v294.1)
B	Spt5-NGN	e3hm0B1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Spt5-NGN	ECOD (v294.1)
A	RRM_1	e3hm0A1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: FAD-dependent thiol oxidase	T: FAD-dependent thiol oxidase	F: RRM_1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
C	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
B	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
A	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Probable Thioesterase	hydrolase activity, acting on ester bonds thiolester hydrolase activity deacylase activity hydrolase activity fatty acyl-CoA hydrolase activity catalytic activity acyl-CoA hydrolase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR014166	Tol-Pal system-associated acyl-CoA thioesterase	Family
A, B, C, D	IPR008272	4-hydroxybenzoyl-CoA thioesterase, active site	Active Site
A, B, C, D	IPR050563	4-hydroxybenzoyl-CoA thioesterase	Family
A, B, C, D	IPR006684	Acyl-CoA thioester hydrolase YbgC/YbaW family	Family
A, B, C, D	IPR029069	HotDog domain superfamily	Homologous Superfamily
A, B, C, D	IPR006683	Thioesterase domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.