3HI2 | pdb_00003hi2

Structure of the N-terminal domain of the E. coli antitoxin MqsA (YgiT/b3021) in complex with the E. coli toxin MqsR (YgiU/b3022)


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DMqsR_toxine3hi2D1 A: a+b two layersX: RelE-likeH: RelE-like (From Topology)T: RelE-likeF: MqsR_toxinECOD (1.6)
BMqsR_toxine3hi2B1 A: a+b two layersX: RelE-likeH: RelE-like (From Topology)T: RelE-likeF: MqsR_toxinECOD (1.6)
CMqsA_antitoxine3hi2C1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: MqsA_antitoxinECOD (1.6)
AMqsA_antitoxine3hi2A1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: MqsA_antitoxinECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.30.2310.40 Alpha Beta 2-Layer Sandwich YaeB-like fold CATH (4.3.0)
B3.30.2310.40 Alpha Beta 2-Layer Sandwich YaeB-like fold CATH (4.3.0)
C3.10.20.860 Alpha Beta Roll Ubiquitin-like (UB roll) CATH (4.3.0)
A3.10.20.860 Alpha Beta Roll Ubiquitin-like (UB roll) CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, D
PF15723Motility quorum-sensing regulator, toxin of MqsA (MqsR_toxin)Motility quorum-sensing regulator, toxin of MqsAMqsR_toxin is a family of bacterial toxins that act as an mRNA interferase. MqsR is the gene most highly upregulated in E. coli persister cells [2] and it plays an essential role in biofilm regulation [3] and cell signalling [4]. It forms part of a b ...MqsR_toxin is a family of bacterial toxins that act as an mRNA interferase. MqsR is the gene most highly upregulated in E. coli persister cells [2] and it plays an essential role in biofilm regulation [3] and cell signalling [4]. It forms part of a bacterial toxin-antitoxin TA system, and as expected for a TA system, the expression of the MqsR toxin leads to growth arrest, while co-expression with its antitoxin, MqsA, rescues the growth arrest phenotype. In addition, MqsR associates with MqsA to form a tight, non-toxic complex and both MqsA alone and the MqsR:MqsA2:MqsR complex bind and regulate the mqsR promoter. The structure of MqsR shows that is is a member of the RelE/YoeB family of bacterial RNases that are structurally and functionally characterised bacterial toxins.y characterized bacterial toxins [1].
Domain
A, C
PF15731Antitoxin component of bacterial toxin-antitoxin system, MqsA (MqsA_antitoxin)Antitoxin component of bacterial toxin-antitoxin system, MqsAMqsA_antitoxin is a family of prokaryotic proteins that act as antidotes to the mRNA interferase MqsR. It has a zinc-binding at the very N-terminus indicating its DNA-binding capacity. MqsR is the gene most highly upregulated in E. Colo MqsR_toxin i ...MqsA_antitoxin is a family of prokaryotic proteins that act as antidotes to the mRNA interferase MqsR. It has a zinc-binding at the very N-terminus indicating its DNA-binding capacity. MqsR is the gene most highly upregulated in E. Colo MqsR_toxin is a family of bacterial toxins that act as an mRNA interferase. MqsR is the gene most highly upregulated in E. coli persister cells [2] and it plays an essential role in biofilm regulation [3] and cell signalling [4]. It forms part of a bacterial toxin-antitoxin TA system, and as expected for a TA system, the expression of the MqsR toxin leads to growth arrest, while co-expression with its antitoxin, MqsA, rescues the growth arrest phenotype. In addition, MqsR associates with MqsA to form a tight, non-toxic complex and both MqsA alone and the MqsR:MqsA2:MqsR complex bind and regulate the mqsR promoter. The structure of MqsR shows that is is a member of the RelE/YoeB family of bacterial RNases that are structurally and functionally characterised bacterial toxins [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, D
Motility quorum-sensing regulator mqsR
A, C
HTH-type transcriptional regulator mqsA(ygiT)