3HHW | pdb_00003hhw

Complex of a vesicular stomatitis virus empty capsid with the nucleocapsid-binding domain of the phosphoprotein

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
J [auth O]	d3hhwo_	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	automated matches	VSIV (Vesicular stomatitis Indiana virus ) [TaxId: 11277 ],	SCOPe (2.08)
I [auth N]	d3hhwn_	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	automated matches	VSIV (Vesicular stomatitis Indiana virus ) [TaxId: 11277 ],	SCOPe (2.08)
H [auth M]	d3hhwm_	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	automated matches	VSIV (Vesicular stomatitis Indiana virus ) [TaxId: 11277 ],	SCOPe (2.08)
G [auth L]	d3hhwl_	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	automated matches	VSIV (Vesicular stomatitis Indiana virus ) [TaxId: 11277 ],	SCOPe (2.08)
F [auth K]	d3hhwk_	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	automated matches	VSIV (Vesicular stomatitis Indiana virus ) [TaxId: 11277 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J [auth O]	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8101675	3001763	SCOP2B (2022-06-29)
I [auth N]	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8101675	3001763	SCOP2B (2022-06-29)
H [auth M]	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8101675	3001763	SCOP2B (2022-06-29)
G [auth L]	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8101675	3001763	SCOP2B (2022-06-29)
F [auth K]	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8101675	3001763	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J [auth O]	Rhabdo_ncap	e3hhwO1	A: alpha complex topology	X: P40 nucleoprotein-like	H: Rhabdovirus nucleocapsid protein (From Topology)	T: Rhabdovirus nucleocapsid protein	F: Rhabdo_ncap	ECOD (1.6)
I [auth N]	Rhabdo_ncap	e3hhwN1	A: alpha complex topology	X: P40 nucleoprotein-like	H: Rhabdovirus nucleocapsid protein (From Topology)	T: Rhabdovirus nucleocapsid protein	F: Rhabdo_ncap	ECOD (1.6)
H [auth M]	Rhabdo_ncap	e3hhwM1	A: alpha complex topology	X: P40 nucleoprotein-like	H: Rhabdovirus nucleocapsid protein (From Topology)	T: Rhabdovirus nucleocapsid protein	F: Rhabdo_ncap	ECOD (1.6)
G [auth L]	Rhabdo_ncap	e3hhwL1	A: alpha complex topology	X: P40 nucleoprotein-like	H: Rhabdovirus nucleocapsid protein (From Topology)	T: Rhabdovirus nucleocapsid protein	F: Rhabdo_ncap	ECOD (1.6)
F [auth K]	Rhabdo_ncap	e3hhwK1	A: alpha complex topology	X: P40 nucleoprotein-like	H: Rhabdovirus nucleocapsid protein (From Topology)	T: Rhabdovirus nucleocapsid protein	F: Rhabdo_ncap	ECOD (1.6)
E	Phosphoprotein_2nd	e3hhwE1	A: alpha arrays	X: Phosphoprotein C-terminal domain (From Topology)	H: Phosphoprotein C-terminal domain (From Topology)	T: Phosphoprotein C-terminal domain	F: Phosphoprotein_2nd	ECOD (1.6)
D	Phosphoprotein_2nd	e3hhwD1	A: alpha arrays	X: Phosphoprotein C-terminal domain (From Topology)	H: Phosphoprotein C-terminal domain (From Topology)	T: Phosphoprotein C-terminal domain	F: Phosphoprotein_2nd	ECOD (1.6)
C	Phosphoprotein_2nd	e3hhwC1	A: alpha arrays	X: Phosphoprotein C-terminal domain (From Topology)	H: Phosphoprotein C-terminal domain (From Topology)	T: Phosphoprotein C-terminal domain	F: Phosphoprotein_2nd	ECOD (1.6)
B	Phosphoprotein_2nd	e3hhwB1	A: alpha arrays	X: Phosphoprotein C-terminal domain (From Topology)	H: Phosphoprotein C-terminal domain (From Topology)	T: Phosphoprotein C-terminal domain	F: Phosphoprotein_2nd	ECOD (1.6)
A	Phosphoprotein_2nd	e3hhwA1	A: alpha arrays	X: Phosphoprotein C-terminal domain (From Topology)	H: Phosphoprotein C-terminal domain (From Topology)	T: Phosphoprotein C-terminal domain	F: Phosphoprotein_2nd	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J [auth O]	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
J [auth O]	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
I [auth N]	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
I [auth N]	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
H [auth M]	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
H [auth M]	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
G [auth L]	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
G [auth L]	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
F [auth K]	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
F [auth K]	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
E	1.10.8.440	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
D	1.10.8.440	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
C	1.10.8.440	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
B	1.10.8.440	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
A	1.10.8.440	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
F [auth K], G [auth L], H [auth M], I [auth N], J [auth O]	PF00945	Rhabdovirus nucleocapsid protein (Rhabdo_ncap)	Rhabdovirus nucleocapsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F [auth K], G [auth L], H [auth M], I [auth N], J [auth O]	Nucleoprotein	RNA binding binding nucleic acid binding	-	protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part helical viral capsid
A, B, C, D, E	Phosphoprotein	RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	-	virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
F [auth K], G [auth L], H [auth M], I [auth N], J [auth O]	IPR035961	Rhabdovirus nucleoprotein-like	Homologous Superfamily
F [auth K], G [auth L], H [auth M], I [auth N], J [auth O]	IPR000448	Rhabdovirus nucleocapsid	Domain
F [auth K], G [auth L], H [auth M], I [auth N], J [auth O]	IPR023330	Rhabdovirus nucleocapsid, N-terminal	Homologous Superfamily
F [auth K], G [auth L], H [auth M], I [auth N], J [auth O]	IPR023331	Rhabdovirus nucleocapsid, C-terminal	Homologous Superfamily
A, B, C, D, E	IPR037263	Phosphoprotein, central domain	Homologous Superfamily
A, B, C, D, E	IPR043036	Phosphoprotein, C-terminal domain, viral	Homologous Superfamily
A, B, C, D, E	IPR048220	Phosphoprotein, C-terminal domain, vesiculovirus	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.