Crystal Structure of an Hfq protein from Synechocystis sp.
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Ketoacyl-synt_C | e3hfoA1 | A: beta barrels | X: Alpha-beta plaits | H: HMA-related | T: HMA, heavy metal-associated domain | F: Ketoacyl-synt_C | ECOD (v294.2) |
| C | Ribosomal_L36 | e3hfoC1 | A: beta barrels | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: Ribosomal_L36 | ECOD (v294.2) |
| B | Ribosomal_L36 | e3hfoB1 | A: beta barrels | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: Ribosomal_L36 | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
| C | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
| B | 2.30.30.100 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF21979 | Hfq related (Hfq_1) | Hfq related | Hfq proteins participate in RNA folding and translational regulation through pairing of small RNAs and messenger RNAs. Hfq proteins share the distinctive Sm fold, and form ring-shaped structures similar to those of the Sm/Lsm proteins regulating mRNA ... | Domain |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR053840 | Hfq-related | Domain | |
| IPR010920 | LSM domain superfamily | Homologous Superfamily |
