3HD5 | pdb_00003hd5

Crystal structure of a thiol:disulfide interchange protein dsbA from Bordetella parapertussis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d3hd5c1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Bordetella parapertussis ) [TaxId: 519 ],	SCOPe (2.08)
C	d3hd5c2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Bordetella parapertussis ) [TaxId: 519 ],	SCOPe (2.08)
B	d3hd5b1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Bordetella parapertussis ) [TaxId: 519 ],	SCOPe (2.08)
B	d3hd5b2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Bordetella parapertussis ) [TaxId: 519 ],	SCOPe (2.08)
A	d3hd5a1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Bordetella parapertussis ) [TaxId: 519 ],	SCOPe (2.08)
A	d3hd5a2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Bordetella parapertussis ) [TaxId: 519 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	DsbA_DsbA	e3hd5C2	A: alpha arrays	X: Insertion subdomain in DsbA-like	H: Insertion subdomain in DsbA-like (From Topology)	T: Insertion subdomain in DsbA-like	F: DsbA_DsbA	ECOD (1.6)
C	Thioredoxin_1	e3hd5C3	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: Thioredoxin_1	ECOD (1.6)
B	DsbA_DsbA	e3hd5B2	A: alpha arrays	X: Insertion subdomain in DsbA-like	H: Insertion subdomain in DsbA-like (From Topology)	T: Insertion subdomain in DsbA-like	F: DsbA_DsbA	ECOD (1.6)
B	Thioredoxin_1	e3hd5B3	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: Thioredoxin_1	ECOD (1.6)
A	DsbA_DsbA	e3hd5A2	A: alpha arrays	X: Insertion subdomain in DsbA-like	H: Insertion subdomain in DsbA-like (From Topology)	T: Insertion subdomain in DsbA-like	F: DsbA_DsbA	ECOD (1.6)
A	Thioredoxin_1	e3hd5A3	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: Thioredoxin_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
B	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
A	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Thiol:disulfide interchange protein dsbA	oxidoreductase activity, acting on a sulfur group of donors disulfide oxidoreductase activity oxidoreductase activity catalytic activity	-	cellular anatomical structure periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR050824	Bacterial Thiol:disulfide Interchange Protein DsbA	Family
A, B, C	IPR023205	Thiol:disulphide interchange protein DsbA/DsbL	Family
A, B, C	IPR001853	DSBA-like thioredoxin domain	Domain
A, B, C	IPR017937	Thioredoxin, conserved site	Conserved Site
A, B, C	IPR013766	Thioredoxin domain	Domain
A, B, C	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.