3H4P | pdb_00003h4p

Proteasome 20S core particle from Methanocaldococcus jannaschii

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
X [auth j]	d3h4pj_	Alpha and beta proteins (a+b)	Ntn hydrolase-like	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	Proteasome subunits	Proteasome beta subunit (catalytic)	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
Z [auth l]	d3h4pl_	Alpha and beta proteins (a+b)	Ntn hydrolase-like	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	Proteasome subunits	Proteasome beta subunit (catalytic)	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
Y [auth k]	d3h4pk_	Alpha and beta proteins (a+b)	Ntn hydrolase-like	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	Proteasome subunits	Proteasome beta subunit (catalytic)	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
W [auth i]	d3h4pi_	Alpha and beta proteins (a+b)	Ntn hydrolase-like	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	Proteasome subunits	Proteasome beta subunit (catalytic)	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
V [auth h]	d3h4ph_	Alpha and beta proteins (a+b)	Ntn hydrolase-like	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	Proteasome subunits	Proteasome beta subunit (catalytic)	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
BA [auth n]	d3h4pn_	Alpha and beta proteins (a+b)	Ntn hydrolase-like	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	Proteasome subunits	Proteasome beta subunit (catalytic)	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
AA [auth m]	d3h4pm_	Alpha and beta proteins (a+b)	Ntn hydrolase-like	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	Proteasome subunits	Proteasome beta subunit (catalytic)	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
G	d3h4pg_	Alpha and beta proteins (a+b)	Ntn hydrolase-like	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	Proteasome subunits	Proteasome alpha subunit (non-catalytic)	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
F	d3h4pf_	Alpha and beta proteins (a+b)	Ntn hydrolase-like	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	Proteasome subunits	Proteasome alpha subunit (non-catalytic)	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
E	d3h4pe_	Alpha and beta proteins (a+b)	Ntn hydrolase-like	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	Proteasome subunits	Proteasome alpha subunit (non-catalytic)	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
D	d3h4pd_	Alpha and beta proteins (a+b)	Ntn hydrolase-like	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	Proteasome subunits	Proteasome alpha subunit (non-catalytic)	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
C	d3h4pc_	Alpha and beta proteins (a+b)	Ntn hydrolase-like	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	Proteasome subunits	Proteasome alpha subunit (non-catalytic)	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
B	d3h4pb_	Alpha and beta proteins (a+b)	Ntn hydrolase-like	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	Proteasome subunits	Proteasome alpha subunit (non-catalytic)	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
A	d3h4pa_	Alpha and beta proteins (a+b)	Ntn hydrolase-like	N-terminal nucleophile aminohydrolases (Ntn hydrolases)	Proteasome subunits	Proteasome alpha subunit (non-catalytic)	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J [auth c]	SCOP2B Superfamily	Class II glutamine amidotransferases	8099566	3000131	SCOP2B (2022-06-29)
X [auth j]	SCOP2B Superfamily	Class II glutamine amidotransferases	8099566	3000131	SCOP2B (2022-06-29)
Z [auth l]	SCOP2B Superfamily	Class II glutamine amidotransferases	8099566	3000131	SCOP2B (2022-06-29)
Y [auth k]	SCOP2B Superfamily	Class II glutamine amidotransferases	8099566	3000131	SCOP2B (2022-06-29)
W [auth i]	SCOP2B Superfamily	Class II glutamine amidotransferases	8099566	3000131	SCOP2B (2022-06-29)
V [auth h]	SCOP2B Superfamily	Class II glutamine amidotransferases	8099566	3000131	SCOP2B (2022-06-29)
N [auth g]	SCOP2B Superfamily	Class II glutamine amidotransferases	8099566	3000131	SCOP2B (2022-06-29)
M [auth f]	SCOP2B Superfamily	Class II glutamine amidotransferases	8099566	3000131	SCOP2B (2022-06-29)
L [auth e]	SCOP2B Superfamily	Class II glutamine amidotransferases	8099566	3000131	SCOP2B (2022-06-29)
K [auth d]	SCOP2B Superfamily	Class II glutamine amidotransferases	8099566	3000131	SCOP2B (2022-06-29)
I [auth b]	SCOP2B Superfamily	Class II glutamine amidotransferases	8099566	3000131	SCOP2B (2022-06-29)
H [auth a]	SCOP2B Superfamily	Class II glutamine amidotransferases	8099566	3000131	SCOP2B (2022-06-29)
BA [auth n]	SCOP2B Superfamily	Class II glutamine amidotransferases	8099566	3000131	SCOP2B (2022-06-29)
AA [auth m]	SCOP2 Family	Proteasome subunits	8099565	4002254	SCOP2 (2022-06-29)
AA [auth m]	SCOP2 Superfamily	Class II glutamine amidotransferases	8099566	3000131	SCOP2 (2022-06-29)
U [auth N]	SCOP2B Superfamily	Class II glutamine amidotransferases	8064002	3000131	SCOP2B (2022-06-29)
T [auth M]	SCOP2B Superfamily	Class II glutamine amidotransferases	8064002	3000131	SCOP2B (2022-06-29)
S [auth L]	SCOP2B Superfamily	Class II glutamine amidotransferases	8064002	3000131	SCOP2B (2022-06-29)
R [auth K]	SCOP2B Superfamily	Class II glutamine amidotransferases	8064002	3000131	SCOP2B (2022-06-29)
Q [auth J]	SCOP2B Superfamily	Class II glutamine amidotransferases	8064002	3000131	SCOP2B (2022-06-29)
P [auth I]	SCOP2B Superfamily	Class II glutamine amidotransferases	8064002	3000131	SCOP2B (2022-06-29)
O [auth H]	SCOP2B Superfamily	Class II glutamine amidotransferases	8064002	3000131	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Class II glutamine amidotransferases	8064002	3000131	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Class II glutamine amidotransferases	8064002	3000131	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Class II glutamine amidotransferases	8064002	3000131	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Class II glutamine amidotransferases	8064002	3000131	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Class II glutamine amidotransferases	8064002	3000131	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Class II glutamine amidotransferases	8064002	3000131	SCOP2B (2022-06-29)
A	SCOP2 Family	Proteasome subunits	8064001	4002254	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Class II glutamine amidotransferases	8064002	3000131	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J [auth c]	RNA_pol_Rpo13	e3h4pc1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
X [auth j]	RNA_pol_Rpo13	e3h4pj1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
Z [auth l]	RNA_pol_Rpo13	e3h4pl1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
Y [auth k]	RNA_pol_Rpo13	e3h4pk1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
W [auth i]	RNA_pol_Rpo13	e3h4pi1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
V [auth h]	RNA_pol_Rpo13	e3h4ph1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
N [auth g]	RNA_pol_Rpo13	e3h4pg1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
M [auth f]	RNA_pol_Rpo13	e3h4pf1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
L [auth e]	RNA_pol_Rpo13	e3h4pe1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
K [auth d]	RNA_pol_Rpo13	e3h4pd1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
I [auth b]	RNA_pol_Rpo13	e3h4pb1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
H [auth a]	RRM_1	e3h4pa1	A: alpha bundles	X: Alpha-beta plaits	H: FAD-dependent thiol oxidase	T: FAD-dependent thiol oxidase	F: RRM_1	ECOD (develop294)
BA [auth n]	RNA_pol_Rpo13	e3h4pn1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
AA [auth m]	RNA_pol_Rpo13	e3h4pm1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
U [auth N]	RNA_pol_Rpo13	e3h4pN1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
T [auth M]	RNA_pol_Rpo13	e3h4pM1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
S [auth L]	RNA_pol_Rpo13	e3h4pL1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
R [auth K]	RNA_pol_Rpo13	e3h4pK1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
Q [auth J]	RNA_pol_Rpo13	e3h4pJ1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
P [auth I]	RNA_pol_Rpo13	e3h4pI1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
O [auth H]	RNA_pol_Rpo13	e3h4pH1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
G	RNA_pol_Rpo13	e3h4pG1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
F	RNA_pol_Rpo13	e3h4pF1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
E	RNA_pol_Rpo13	e3h4pE1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
D	RNA_pol_Rpo13	e3h4pD1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
C	RNA_pol_Rpo13	e3h4pC1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
B	RNA_pol_Rpo13	e3h4pB1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (develop294)
A	RRM_1	e3h4pA1	A: alpha bundles	X: Alpha-beta plaits	H: FAD-dependent thiol oxidase	T: FAD-dependent thiol oxidase	F: RRM_1	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F, G, O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N]	PF00227	Proteasome subunit (Proteasome)	Proteasome subunit	The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...	The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth m], BA [auth n], H [auth a], I [auth b], J [auth c], AA [auth m], BA [auth n], H [auth a], I [auth b], J [auth c], K [auth d], L [auth e], M [auth f], N [auth g], V [auth h], W [auth i], X [auth j], Y [auth k], Z [auth l]	Proteasome subunit beta	peptidase activity catalytic activity, acting on a protein threonine-type peptidase activity hydrolase activity catalytic activity endopeptidase activity threonine-type endopeptidase activity	catabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex catalytic complex peptidase complex proteasome complex endopeptidase complex proteasome core complex intracellular protein-containing complex proteasome core complex, beta-subunit complex
A, B, C, D, E, A, B, C, D, E, F, G, O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N]	Proteasome subunit alpha	peptidase activity catalytic activity, acting on a protein threonine-type peptidase activity hydrolase activity catalytic activity endopeptidase activity threonine-type endopeptidase activity	catabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm protein-containing complex proteasome core complex, alpha-subunit complex catalytic complex peptidase complex proteasome complex endopeptidase complex proteasome core complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth m], BA [auth n], H [auth a], I [auth b], J [auth c], AA [auth m], BA [auth n], H [auth a], I [auth b], J [auth c], K [auth d], L [auth e], M [auth f], N [auth g], V [auth h], W [auth i], X [auth j], Y [auth k], Z [auth l]	IPR016050	Proteasome beta-type subunit, conserved site	Conserved Site
AA [auth m], BA [auth n], H [auth a], I [auth b], J [auth c], AA [auth m], BA [auth n], H [auth a], I [auth b], J [auth c], K [auth d], L [auth e], M [auth f], N [auth g], V [auth h], W [auth i], X [auth j], Y [auth k], Z [auth l]	IPR023333	Proteasome B-type subunit	Family
AA [auth m], BA [auth n], H [auth a], I [auth b], J [auth c], AA [auth m], BA [auth n], H [auth a], I [auth b], J [auth c], K [auth d], L [auth e], M [auth f], N [auth g], V [auth h], W [auth i], X [auth j], Y [auth k], Z [auth l]	IPR029055	Nucleophile aminohydrolases, N-terminal	Homologous Superfamily
AA [auth m], BA [auth n], H [auth a], I [auth b], J [auth c], AA [auth m], BA [auth n], H [auth a], I [auth b], J [auth c], K [auth d], L [auth e], M [auth f], N [auth g], V [auth h], W [auth i], X [auth j], Y [auth k], Z [auth l]	IPR019983	Peptidase T1A, proteasome beta-subunit, archaeal	Family
AA [auth m], BA [auth n], H [auth a], I [auth b], J [auth c], AA [auth m], BA [auth n], H [auth a], I [auth b], J [auth c], K [auth d], L [auth e], M [auth f], N [auth g], V [auth h], W [auth i], X [auth j], Y [auth k], Z [auth l]	IPR001353	Proteasome, subunit alpha/beta	Family
AA [auth m], BA [auth n], H [auth a], I [auth b], J [auth c], AA [auth m], BA [auth n], H [auth a], I [auth b], J [auth c], K [auth d], L [auth e], M [auth f], N [auth g], V [auth h], W [auth i], X [auth j], Y [auth k], Z [auth l]	IPR000243	Peptidase T1A, proteasome beta-subunit	Family
A, B, C, D, E, A, B, C, D, E, F, G, O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N]	IPR000426	Proteasome alpha-subunit, N-terminal domain	Domain
A, B, C, D, E, A, B, C, D, E, F, G, O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N]	IPR029055	Nucleophile aminohydrolases, N-terminal	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N]	IPR050115	Proteasome subunit alpha	Family
A, B, C, D, E, A, B, C, D, E, F, G, O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N]	IPR023332	Proteasome alpha-type subunit	Family
A, B, C, D, E, A, B, C, D, E, F, G, O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N]	IPR001353	Proteasome, subunit alpha/beta	Family
A, B, C, D, E, A, B, C, D, E, F, G, O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N]	IPR019982	Proteasome alpha subunit, archaeal	Family