3H43 | pdb_00003h43

N-terminal domain of the proteasome-activating nucleotidase of Methanocaldococcus jannaschii

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d3h43c2	All beta proteins	OB-fold	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome-activating nucleotidase PAN, OB-fold domain	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
C	d3h43c1	Coiled coil proteins	Parallel coiled-coil	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits PAN/Rpt coiled coil regions	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
F	d3h43f2	All beta proteins	OB-fold	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome-activating nucleotidase PAN, OB-fold domain	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
F	d3h43f1	Coiled coil proteins	Parallel coiled-coil	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits PAN/Rpt coiled coil regions	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
G	d3h43g2	All beta proteins	OB-fold	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome-activating nucleotidase PAN, OB-fold domain	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
G	d3h43g1	Coiled coil proteins	Parallel coiled-coil	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits PAN/Rpt coiled coil regions	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
I	d3h43i2	All beta proteins	OB-fold	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome-activating nucleotidase PAN, OB-fold domain	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
I	d3h43i1	Coiled coil proteins	Parallel coiled-coil	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits PAN/Rpt coiled coil regions	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
I	d3h43i3	Artifacts	Tags	Tags	Tags	C-terminal Tags	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
J	d3h43j2	All beta proteins	OB-fold	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome-activating nucleotidase PAN, OB-fold domain	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
J	d3h43j1	Coiled coil proteins	Parallel coiled-coil	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits PAN/Rpt coiled coil regions	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
L	d3h43l2	All beta proteins	OB-fold	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome-activating nucleotidase PAN, OB-fold domain	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
L	d3h43l1	Coiled coil proteins	Parallel coiled-coil	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits PAN/Rpt coiled coil regions	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
L	d3h43l3	Artifacts	Tags	Tags	Tags	C-terminal Tags	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
K	d3h43k2	All beta proteins	OB-fold	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome-activating nucleotidase PAN, OB-fold domain	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
K	d3h43k1	Coiled coil proteins	Parallel coiled-coil	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits PAN/Rpt coiled coil regions	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
K	d3h43k3	Artifacts	Tags	Tags	Tags	C-terminal Tags	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
H	d3h43h2	All beta proteins	OB-fold	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome-activating nucleotidase PAN, OB-fold domain	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
H	d3h43h1	Coiled coil proteins	Parallel coiled-coil	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits PAN/Rpt coiled coil regions	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
H	d3h43h3	Artifacts	Tags	Tags	Tags	C-terminal Tags	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
E	d3h43e2	All beta proteins	OB-fold	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome-activating nucleotidase PAN, OB-fold domain	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
E	d3h43e1	Coiled coil proteins	Parallel coiled-coil	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits PAN/Rpt coiled coil regions	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
D	d3h43d2	All beta proteins	OB-fold	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome-activating nucleotidase PAN, OB-fold domain	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
D	d3h43d1	Coiled coil proteins	Parallel coiled-coil	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits PAN/Rpt coiled coil regions	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
B	d3h43b2	All beta proteins	OB-fold	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome-activating nucleotidase PAN, OB-fold domain	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
B	d3h43b1	Coiled coil proteins	Parallel coiled-coil	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits PAN/Rpt coiled coil regions	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
A	d3h43a2	All beta proteins	OB-fold	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome regulatory subunits PAN/Rpt, OB-fold domain	Proteasome-activating nucleotidase PAN, OB-fold domain	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)
A	d3h43a1	Coiled coil proteins	Parallel coiled-coil	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits coiled coil regions	Proteasome regulatory subunits PAN/Rpt coiled coil regions	Methanococcus jannaschii (Methanocaldococcus jannaschii ) [TaxId: 2190 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091039	3000354	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091039	3000354	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091039	3000354	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091039	3000354	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091039	3000354	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091039	3000354	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091039	3000354	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091039	3000354	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091039	3000354	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091039	3000354	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8091039	3000354	SCOP2B (2022-06-29)
A	SCOP2 Family	Arc OB C-terminal domain-like	8091038	4004561	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	HypC/PAN OB-fold domain-like	8091039	3000354	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	RNA_pol_Rpo13	e3h43C1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (v294.1)
F	RNA_pol_Rpo13	e3h43F1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (v294.1)
G	RNA_pol_Rpo13	e3h43G1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (v294.1)
I	RNA_pol_Rpo13	e3h43I1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (v294.1)
J	RNA_pol_Rpo13	e3h43J1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (v294.1)
L	RNA_pol_Rpo13	e3h43L1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (v294.1)
K	RNA_pol_Rpo13	e3h43K1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (v294.1)
H	RNA_pol_Rpo13	e3h43H1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (v294.1)
E	RNA_pol_Rpo13	e3h43E1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (v294.1)
D	RNA_pol_Rpo13	e3h43D1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (v294.1)
B	RNA_pol_Rpo13	e3h43B1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (v294.1)
A	DUF1968	e3h43A1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: FAD-dependent thiol oxidase	T: FAD-dependent thiol oxidase	F: DUF1968	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF16450	Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)	Proteasomal ATPase OB C-terminal domain	This is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2]	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Proteasome-activating nucleotidase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity GTPase activity CTPase activity polypeptide conformation or assembly isomerase activity isomerase activity proteasome-activating activity macromolecular conformation isomerase activity	cellular process protein unfolding catabolic process proteasomal protein catabolic process metabolic process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process	proteasome accessory complex protein-containing complex intracellular anatomical structure cellular anatomical structure catalytic complex peptidase complex proteasome complex endopeptidase complex proteasome-activating nucleotidase complex intracellular protein-containing complex proteasome regulatory particle proteasome regulatory particle, base subcomplex cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR050221	26S Proteasome Regulatory ATPase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR041569	AAA ATPase, AAA+ lid domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR032501	Proteasomal ATPase, second OB domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR003960	ATPase, AAA-type, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR003593	AAA+ ATPase domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR003959	ATPase, AAA-type, core	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR023501	Proteasome-activating nucleotidase PAN	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily