3GTY | pdb_00003gty

Promiscuous Substrate Recognition in Folding and Assembly Activities of the Trigger Factor Chaperone

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth S]	SCOP2 Family	Ribosomal protein S7	8066024	4001112	SCOP2 (2022-06-29)
B [auth S]	SCOP2 Superfamily	Ribosomal protein S7	8066025	3000799	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth S]	SnoaL_3	e3gtyS1	A: a/b three-layered sandwiches	X: Cystatin-like	H: NTF2-like	T: NTF2-like	F: SnoaL_3	ECOD (v294.1)
A [auth X]	Peptidase_M42	e3gtyX1	A: a/b three-layered sandwiches	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleic acid-binding protein	F: Peptidase_M42	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B [auth S]	1.10.455.10	Mainly Alpha	Orthogonal Bundle	Ribosomal Protein S7	Ribosomal protein S7/S5	CATH (4.3.0)
A [auth X]	3.30.70.1050	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Trigger factor ribosome-binding domain	CATH (4.3.0)
A [auth X]	3.10.50.30	Alpha Beta	Roll	Chitinase A	domain 3	CATH (4.3.0)
A [auth X]	1.10.3120.10	Mainly Alpha	Orthogonal Bundle	Trigger factor, domain 2	Trigger factor, C-terminal domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth S]	PF00177	Ribosomal protein S7p/S5e (Ribosomal_S7)	Ribosomal protein S7p/S5e	This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.	Domain
A [auth X]	PF05698	Bacterial trigger factor protein (TF) C-terminus (Trigger_C)	Bacterial trigger factor protein (TF) C-terminus	-	Family
A [auth X]	PF05697	Bacterial trigger factor protein (TF) (Trigger_N)	Bacterial trigger factor protein (TF)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth S]	30S ribosomal protein S7	RNA binding binding nucleic acid binding mRNA binding tRNA binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
A [auth X]	Trigger factor	DNA binding binding nucleic acid binding isomerase activity catalytic activity, acting on a protein peptidyl-prolyl cis-trans isomerase activity catalytic activity cis-trans isomerase activity ribonucleoprotein complex binding protein-containing complex binding ribosome binding protein folding chaperone	primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process 'de novo' cotranslational protein folding metabolic process cellular process protein metabolic process macromolecule metabolic process 'de novo' protein folding protein unfolding cell division primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process 'de novo' cotranslational protein folding metabolic process cellular process protein metabolic process macromolecule metabolic process 'de novo' protein folding protein unfolding cell division localization establishment of protein localization protein transport transport macromolecule localization intracellular protein localization establishment of localization regulation of cellular process RNA metabolic process regulation of primary metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of DNA-templated transcription elongation regulation of biological process biological regulation regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of gene expression DNA-templated transcription elongation regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth S]	IPR020606	Small ribosomal subunit protein uS7, conserved site	Conserved Site
B [auth S]	IPR000235	Small ribosomal subunit protein uS7	Family
B [auth S]	IPR005717	Small ribosomal subunit protein uS7, bacteria/organella	Family
B [auth S]	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
B [auth S]	IPR023798	Small ribosomal subunit protein uS7 domain	Domain
A [auth X]	IPR036611	Trigger factor ribosome-binding domain superfamily	Homologous Superfamily
A [auth X]	IPR008881	Trigger factor, ribosome-binding, bacterial	Domain
A [auth X]	IPR027304	Trigger factor/SurA domain superfamily	Homologous Superfamily
A [auth X]	IPR037041	Trigger factor, C-terminal domain superfamily	Homologous Superfamily
A [auth X]	IPR036953	Transcription elongation factor GreA/GreB, C-terminal domain superfamily	Homologous Superfamily
A [auth X]	IPR008880	Trigger factor, C-terminal	Domain
A [auth X]	IPR005215	Trigger factor	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.