3GTY | pdb_00003gty

Promiscuous Substrate Recognition in Folding and Assembly Activities of the Trigger Factor Chaperone

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth S]	SCOP2 Family	Ribosomal protein S7	8066024	4001112	SCOP2 (2022-06-29)
B [auth S]	SCOP2 Superfamily	Ribosomal protein S7	8066025	3000799	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth X]	Trigger_C	e3gtyX2	A: alpha arrays	X: Triger factor/SurA peptide-binding domain-like (From Homology)	H: Triger factor/SurA peptide-binding domain-like	T: TF C-terminus (Pfam 05698)	F: Trigger_C	ECOD (1.6)
A [auth X]	Tig	e3gtyX3	A: a+b two layers	X: FKBP-like	H: FKBP-like	T: FKBP-like	F: Tig	ECOD (1.6)
A [auth X]	Trigger_N	e3gtyX1	A: a+b two layers	X: Glucose permease domain IIB-like	H: Trigger factor ribosome-binding domain (From Topology)	T: Trigger factor ribosome-binding domain	F: Trigger_N	ECOD (1.6)
B [auth S]	Ribosomal_S7_1	e3gtyS1	A: alpha arrays	X: Ribosomal protein S7 (From Topology)	H: Ribosomal protein S7 (From Topology)	T: Ribosomal protein S7	F: Ribosomal_S7_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth X]	3.30.70.1050	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Trigger factor ribosome-binding domain	CATH (4.3.0)
A [auth X]	3.10.50.30	Alpha Beta	Roll	Chitinase A	domain 3	CATH (4.3.0)
A [auth X]	1.10.3120.10	Mainly Alpha	Orthogonal Bundle	Trigger factor, domain 2	Trigger factor, C-terminal domain	CATH (4.3.0)
B [auth S]	1.10.455.10	Mainly Alpha	Orthogonal Bundle	Ribosomal Protein S7	Ribosomal protein S7/S5	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth X]	PF05698	Bacterial trigger factor protein (TF) C-terminus (Trigger_C)	Bacterial trigger factor protein (TF) C-terminus	-	Family
A [auth X]	PF05697	Bacterial trigger factor protein (TF) (Trigger_N)	Bacterial trigger factor protein (TF)	-	Family
B [auth S]	PF00177	Ribosomal protein S7p/S5e (Ribosomal_S7)	Ribosomal protein S7p/S5e	This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth X]	Trigger factor	DNA binding binding nucleic acid binding isomerase activity catalytic activity, acting on a protein peptidyl-prolyl cis-trans isomerase activity catalytic activity cis-trans isomerase activity RNA polymerase II CTD heptapeptide repeat modifying activity RNA polymerase II CTD heptapeptide repeat peptidyl-prolyl isomerase activity RNA polymerase II CTD heptapeptide repeat P6 isomerase activity ribonucleoprotein complex binding protein-containing complex binding ribosome binding DNA binding binding nucleic acid binding isomerase activity catalytic activity, acting on a protein peptidyl-prolyl cis-trans isomerase activity catalytic activity cis-trans isomerase activity RNA polymerase II CTD heptapeptide repeat modifying activity RNA polymerase II CTD heptapeptide repeat peptidyl-prolyl isomerase activity RNA polymerase II CTD heptapeptide repeat P6 isomerase activity ribonucleoprotein complex binding protein-containing complex binding ribosome binding protein folding chaperone RNA polymerase II CTD heptapeptide repeat P3 isomerase activity	primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process 'de novo' cotranslational protein folding metabolic process cellular process protein metabolic process macromolecule metabolic process 'de novo' protein folding protein unfolding cell division primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process 'de novo' cotranslational protein folding metabolic process cellular process protein metabolic process macromolecule metabolic process 'de novo' protein folding protein unfolding cell division chaperone-mediated protein folding protein localization establishment of protein localization cellular localization nitrogen compound transport transport establishment of localization localization protein transport cellular macromolecule localization macromolecule localization regulation of cellular process RNA metabolic process regulation of primary metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of DNA-templated transcription elongation regulation of biological process biological regulation regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of gene expression DNA-templated transcription elongation regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm
B [auth S]	30S ribosomal protein S7	RNA binding binding nucleic acid binding mRNA binding rRNA binding tRNA binding structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth X]	IPR036611	Trigger factor ribosome-binding domain superfamily	Homologous Superfamily
A [auth X]	IPR008881	Trigger factor, ribosome-binding, bacterial	Domain
A [auth X]	IPR027304	Trigger factor/SurA domain superfamily	Homologous Superfamily
A [auth X]	IPR037041	Trigger factor, C-terminal domain superfamily	Homologous Superfamily
A [auth X]	IPR036953	Transcription elongation factor GreA/GreB, C-terminal domain superfamily	Homologous Superfamily
A [auth X]	IPR008880	Trigger factor, C-terminal	Domain
A [auth X]	IPR005215	Trigger factor	Family
B [auth S]	IPR020606	Small ribosomal subunit protein uS7, conserved site	Conserved Site
B [auth S]	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
B [auth S]	IPR000235	Small ribosomal subunit protein uS7	Family
B [auth S]	IPR005717	Small ribosomal subunit protein uS7, bacterial/organellar-type	Family
B [auth S]	IPR023798	Small ribosomal subunit protein uS7 domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.