3GOS | pdb_00003gos

The crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase from Yersinia pestis CO92

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d3gosc1	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD	automated matches	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
C	d3gosc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
B	d3gosb1	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD	automated matches	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
B	d3gosb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
A	d3gosa1	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD	automated matches	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
A	d3gosa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Hexapep_2_1	e3gosC1	A: beta duplicates or obligate multimers	X: Single-stranded left-handed beta-helix	H: Trimeric LpxA-like enzymes (From Topology)	T: Trimeric LpxA-like enzymes	F: Hexapep_2_1	ECOD (1.6)
C	THDPS_N_2	e3gosC2	A: alpha arrays	X: Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain (From Topology)	H: Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain (From Topology)	T: Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain	F: THDPS_N_2	ECOD (1.6)
B	Hexapep_2_1	e3gosB1	A: beta duplicates or obligate multimers	X: Single-stranded left-handed beta-helix	H: Trimeric LpxA-like enzymes (From Topology)	T: Trimeric LpxA-like enzymes	F: Hexapep_2_1	ECOD (1.6)
B	THDPS_N_2	e3gosB2	A: alpha arrays	X: Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain (From Topology)	H: Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain (From Topology)	T: Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain	F: THDPS_N_2	ECOD (1.6)
A	Hexapep_2_1	e3gosA1	A: beta duplicates or obligate multimers	X: Single-stranded left-handed beta-helix	H: Trimeric LpxA-like enzymes (From Topology)	T: Trimeric LpxA-like enzymes	F: Hexapep_2_1	ECOD (1.6)
A	THDPS_N_2	e3gosA2	A: alpha arrays	X: Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain (From Topology)	H: Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain (From Topology)	T: Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain	F: THDPS_N_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	1.10.166.10	Mainly Alpha	Orthogonal Bundle	Tetrahydrodipicolinate-N-succinyltransferase	Chain A, domain 1	CATH (4.3.0)
C	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
B	1.10.166.10	Mainly Alpha	Orthogonal Bundle	Tetrahydrodipicolinate-N-succinyltransferase	Chain A, domain 1	CATH (4.3.0)
B	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
A	1.10.166.10	Mainly Alpha	Orthogonal Bundle	Tetrahydrodipicolinate-N-succinyltransferase	Chain A, domain 1	CATH (4.3.0)
A	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF14805	Tetrahydrodipicolinate N-succinyltransferase N-terminal (THDPS_N_2)	Tetrahydrodipicolinate N-succinyltransferase N-terminal	This is the N-terminal domain of 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [1].	Domain
A, B, C	PF14602	Hexapeptide repeat of succinyl-transferase (Hexapep_2)	Hexapeptide repeat of succinyl-transferase	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	N-succinyltransferase activity acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity succinyltransferase activity catalytic activity N-acyltransferase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups	lysine metabolic process oxoacid metabolic process small molecule biosynthetic process aspartate family amino acid biosynthetic process carboxylic acid metabolic process L-amino acid biosynthetic process amino acid metabolic process primary metabolic process organic acid metabolic process organic acid biosynthetic process alpha-amino acid metabolic process L-amino acid metabolic process carboxylic acid biosynthetic process lysine biosynthetic process proteinogenic amino acid metabolic process lysine metabolic process oxoacid metabolic process small molecule biosynthetic process aspartate family amino acid biosynthetic process carboxylic acid metabolic process L-amino acid biosynthetic process amino acid metabolic process primary metabolic process organic acid metabolic process organic acid biosynthetic process alpha-amino acid metabolic process L-amino acid metabolic process carboxylic acid biosynthetic process lysine biosynthetic process proteinogenic amino acid metabolic process amino acid biosynthetic process biosynthetic process proteinogenic amino acid biosynthetic process metabolic process cellular process small molecule metabolic process alpha-amino acid biosynthetic process diaminopimelate biosynthetic process dicarboxylic acid metabolic process lipid biosynthetic process fatty acid derivative biosynthetic process fatty acid derivative metabolic process dicarboxylic acid biosynthetic process lipid metabolic process lysine biosynthetic process via diaminopimelate	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR023180	Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1	Domain
A, B, C	IPR011004	Trimeric LpxA-like superfamily	Homologous Superfamily
A, B, C	IPR005664	Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family	Family
A, B, C	IPR018357	Hexapeptide transferase, conserved site	Conserved Site
A, B, C	IPR037133	Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily	Homologous Superfamily
A, B, C	IPR001451	Hexapeptide repeat	Repeat

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.