Crystal structure of a probable RNA-binding protein from Clostridium symbiosum ATCC 14940
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | G2BR | e3gkuC1 | A: alpha arrays | X: Cysteine proteinases-like | H: Cysteine proteinases | T: DNA polymerase III clamp loader subunits, C-terminal domain | F: G2BR | ECOD (v295.2) |
| B | Prenyltrans | e3gkuB7 | A: alpha arrays | X: Fusion glycoprotein F2 | H: Fusion glycoprotein F2 | T: Fusion glycoprotein F2 | F: Prenyltrans | ECOD (v295.2) |
| A | Jag_N | e3gkuA1 | A: alpha arrays | X: LEE-encoded effector EspG C-terminal domain-related | H: LEE-encoded effector EspG C-terminal domain-related | T: LEE-encoded effector EspG C-terminal domain-related | F: Jag_N | ECOD (v295.2) |
| A | EspG | e3gkuA2 | A: alpha arrays | X: LEE-encoded effector EspG C-terminal domain-related | H: LEE-encoded effector EspG C-terminal domain-related | T: LEE-encoded effector EspG C-terminal domain-related | F: EspG | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C | 3.30.30.80 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | probable RNA-binding protein from clostridium symbiosum atcc 14940 | CATH (4.3.0) |
| C | 3.30.300.20 | Alpha Beta | 2-Layer Sandwich | GMP Synthetase | Chain A, domain 3 | CATH (4.3.0) |
| B | 3.30.30.80 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | probable RNA-binding protein from clostridium symbiosum atcc 14940 | CATH (4.3.0) |
| B | 3.30.300.20 | Alpha Beta | 2-Layer Sandwich | GMP Synthetase | Chain A, domain 3 | CATH (4.3.0) |
| B | 3.30.1370.50 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S8 | Chain: A, domain 1 | CATH (4.3.0) |
| A | 3.30.30.80 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | probable RNA-binding protein from clostridium symbiosum atcc 14940 | CATH (4.3.0) |
| A | 3.30.300.20 | Alpha Beta | 2-Layer Sandwich | GMP Synthetase | Chain A, domain 3 | CATH (4.3.0) |
| A | 3.30.1370.50 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S8 | Chain: A, domain 1 | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR015946 | K homology domain-like, alpha/beta | Homologous Superfamily | |
| IPR038008 | Jag, KH domain | Domain | |
| IPR038247 | Jag, N-terminal domain superfamily | Homologous Superfamily | |
| IPR034079 | RNA-binding protein KhpB, R3H domain | Domain | |
| IPR039247 | RNA-binding protein KhpB | Family | |
| IPR032782 | RNA-binding protein KhpB, N-terminal | Domain | |
| IPR036867 | R3H domain superfamily | Homologous Superfamily | |
| IPR001374 | R3H domain | Domain |