3GKF | pdb_00003gkf

Crystal Structure of E. coli LsrF

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
T [auth A]	HTH_3	e3gkfA1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)
S [auth D]	HTH_3	e3gkfD1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)
R [auth C]	HTH_3	e3gkfC1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)
Q [auth B]	HTH_3	e3gkfB1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)
P [auth E]	HTH_3	e3gkfE1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)
O [auth T]	HTH_3	e3gkfT1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)
N [auth R]	HTH_3	e3gkfR1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)
M [auth Q]	HTH_3	e3gkfQ1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)
L [auth P]	HTH_3	e3gkfP1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)
K [auth S]	HTH_3	e3gkfS1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)
J	HTH_3	e3gkfJ1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)
I [auth G]	HTH_3	e3gkfG1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)
H	HTH_3	e3gkfH1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)
G [auth I]	HTH_3	e3gkfI1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)
F	HTH_3	e3gkfF1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)
E [auth K]	HTH_3	e3gkfK1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)
D [auth N]	HTH_3	e3gkfN1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)
C [auth M]	HTH_3	e3gkfM1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)
B [auth L]	HTH_3	e3gkfL1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)
A [auth O]	HTH_3	e3gkfO1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
T [auth A]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
S [auth D]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
R [auth C]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
Q [auth B]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
P [auth E]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
O [auth T]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
N [auth R]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
M [auth Q]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
L [auth P]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
K [auth S]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
J	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
I [auth G]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
H	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
G [auth I]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
F	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
E [auth K]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
D [auth N]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
C [auth M]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
B [auth L]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
A [auth O]	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth O], B [auth L], C [auth M], D [auth N], E [auth K], A [auth O], B [auth L], C [auth M], D [auth N], E [auth K], F, G [auth I], H, I [auth G], J, K [auth S], L [auth P], M [auth Q], N [auth R], O [auth T], P [auth E], Q [auth B], R [auth C], S [auth D], T [auth A]	PF01791	DeoC/LacD family aldolase (DeoC)	DeoC/LacD family aldolase	This family includes diverse aldolase enzymes. This family includes the enzyme deoxyribose-phosphate aldolase EC:4.1.2.4, which is involved in nucleotide metabolism. The family also includes a group of related bacterial proteins of unknown function, ...	This family includes diverse aldolase enzymes. This family includes the enzyme deoxyribose-phosphate aldolase EC:4.1.2.4, which is involved in nucleotide metabolism. The family also includes a group of related bacterial proteins of unknown function, see examples Swiss:Q57843 and Swiss:P76143. The family also includes tagatose 1,6-diphosphate aldolase (EC:4.1.2.40) is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth O], B [auth L], C [auth M], D [auth N], E [auth K], A [auth O], B [auth L], C [auth M], D [auth N], E [auth K], F, G [auth I], H, I [auth G], J, K [auth S], L [auth P], M [auth Q], N [auth R], O [auth T], P [auth E], Q [auth B], R [auth C], S [auth D], T [auth A]	Aldolase lsrF	fructose-bisphosphate aldolase activity lyase activity catalytic activity carbon-carbon lyase activity aldehyde-lyase activity acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth O], B [auth L], C [auth M], D [auth N], E [auth K], A [auth O], B [auth L], C [auth M], D [auth N], E [auth K], F, G [auth I], H, I [auth G], J, K [auth S], L [auth P], M [auth Q], N [auth R], O [auth T], P [auth E], Q [auth B], R [auth C], S [auth D], T [auth A]	IPR002915	DeoC/FbaB/LacD aldolase	Family
A [auth O], B [auth L], C [auth M], D [auth N], E [auth K], A [auth O], B [auth L], C [auth M], D [auth N], E [auth K], F, G [auth I], H, I [auth G], J, K [auth S], L [auth P], M [auth Q], N [auth R], O [auth T], P [auth E], Q [auth B], R [auth C], S [auth D], T [auth A]	IPR033673	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	Family
A [auth O], B [auth L], C [auth M], D [auth N], E [auth K], A [auth O], B [auth L], C [auth M], D [auth N], E [auth K], F, G [auth I], H, I [auth G], J, K [auth S], L [auth P], M [auth Q], N [auth R], O [auth T], P [auth E], Q [auth B], R [auth C], S [auth D], T [auth A]	IPR041720	Aldolase FbaB-like, archaeal-type	Family
A [auth O], B [auth L], C [auth M], D [auth N], E [auth K], A [auth O], B [auth L], C [auth M], D [auth N], E [auth K], F, G [auth I], H, I [auth G], J, K [auth S], L [auth P], M [auth Q], N [auth R], O [auth T], P [auth E], Q [auth B], R [auth C], S [auth D], T [auth A]	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily
A [auth O], B [auth L], C [auth M], D [auth N], E [auth K], A [auth O], B [auth L], C [auth M], D [auth N], E [auth K], F, G [auth I], H, I [auth G], J, K [auth S], L [auth P], M [auth Q], N [auth R], O [auth T], P [auth E], Q [auth B], R [auth C], S [auth D], T [auth A]	IPR050456	DeoC/FbaB aldolase	Family

Prepare Data

Validate Data

Deposit Data

Help and Resources

.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 3GKF | pdb_00003gkf

Crystal Structure of E. coli LsrF

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

3GKF | pdb_00003gkf