3G5G | pdb_00003g5g

Crystal Structure of the Wild-Type Restriction-Modification Controller Protein C.Esp1396I

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d3g5gf_	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	automated matches	automated matches	(Enterobacter sp. RFL1396 ) [TaxId: 211595 ],	SCOPe (2.08)
N	d3g5gn_	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	automated matches	automated matches	(Enterobacter sp. RFL1396 ) [TaxId: 211595 ],	SCOPe (2.08)
M	d3g5gm_	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	automated matches	automated matches	(Enterobacter sp. RFL1396 ) [TaxId: 211595 ],	SCOPe (2.08)
L	d3g5gl_	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	automated matches	automated matches	(Enterobacter sp. RFL1396 ) [TaxId: 211595 ],	SCOPe (2.08)
K	d3g5gk_	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	automated matches	automated matches	(Enterobacter sp. RFL1396 ) [TaxId: 211595 ],	SCOPe (2.08)
J	d3g5gj_	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	automated matches	automated matches	(Enterobacter sp. RFL1396 ) [TaxId: 211595 ],	SCOPe (2.08)
I	d3g5gi_	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	automated matches	automated matches	(Enterobacter sp. RFL1396 ) [TaxId: 211595 ],	SCOPe (2.08)
H	d3g5gh_	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	automated matches	automated matches	(Enterobacter sp. RFL1396 ) [TaxId: 211595 ],	SCOPe (2.08)
G	d3g5gg_	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	automated matches	automated matches	(Enterobacter sp. RFL1396 ) [TaxId: 211595 ],	SCOPe (2.08)
E	d3g5ge_	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	automated matches	automated matches	(Enterobacter sp. RFL1396 ) [TaxId: 211595 ],	SCOPe (2.08)
D	d3g5gd_	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	automated matches	automated matches	(Enterobacter sp. RFL1396 ) [TaxId: 211595 ],	SCOPe (2.08)
C	d3g5gc_	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	automated matches	automated matches	(Enterobacter sp. RFL1396 ) [TaxId: 211595 ],	SCOPe (2.08)
B	d3g5gb_	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	automated matches	automated matches	(Enterobacter sp. RFL1396 ) [TaxId: 211595 ],	SCOPe (2.08)
A	d3g5ga_	All alpha proteins	lambda repressor-like DNA-binding domains	lambda repressor-like DNA-binding domains	automated matches	automated matches	(Enterobacter sp. RFL1396 ) [TaxId: 211595 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8086835	3000119	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8086835	3000119	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8086835	3000119	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8086835	3000119	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8086835	3000119	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8086835	3000119	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8086835	3000119	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8086835	3000119	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8086835	3000119	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8086835	3000119	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8086835	3000119	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8086835	3000119	SCOP2B (2022-06-29)
B	SCOP2 Family	SinR domain-like	8086834	4000896	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	lambda C1 repressor DNA-binding domain-like	8086835	3000119	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	lambda C1 repressor DNA-binding domain-like	8086835	3000119	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	HTH_3_1	e3g5gF1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3_1	ECOD (1.6)
N	HTH_3_1	e3g5gN1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3_1	ECOD (1.6)
M	HTH_3_1	e3g5gM1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3_1	ECOD (1.6)
L	HTH_3_1	e3g5gL1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3_1	ECOD (1.6)
K	HTH_3_1	e3g5gK1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3_1	ECOD (1.6)
J	HTH_3_1	e3g5gJ1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3_1	ECOD (1.6)
I	HTH_3_1	e3g5gI1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3_1	ECOD (1.6)
H	HTH_3_1	e3g5gH1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3_1	ECOD (1.6)
G	HTH_3_1	e3g5gG1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3_1	ECOD (1.6)
E	HTH_3_1	e3g5gE1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3_1	ECOD (1.6)
D	HTH_3_1	e3g5gD1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3_1	ECOD (1.6)
C	HTH_3_1	e3g5gC1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3_1	ECOD (1.6)
B	HTH_3_1	e3g5gB1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3_1	ECOD (1.6)
A	HTH_3_1	e3g5gA1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
N	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
M	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
L	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
K	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
J	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
I	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
H	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
G	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
E	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
D	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
C	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
B	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)
A	1.10.260.40	Mainly Alpha	Orthogonal Bundle	434 Repressor (Amino-terminal Domain)	lambda repressor-like DNA-binding domains	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	PF01381	Helix-turn-helix (HTH_3)	Helix-turn-helix	This large family of DNA binding helix-turn helix proteins includes Cro Swiss:P03036 and CI Swiss:P03034. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be ...	This large family of DNA binding helix-turn helix proteins includes Cro Swiss:P03036 and CI Swiss:P03034. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	Regulatory protein	DNA binding binding nucleic acid binding transcription regulator activity DNA-binding transcription factor activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR050807	Transcriptional regulator/dioxygenase, bacterial-type	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR001387	Cro/C1-type, helix-turn-helix domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR010982	Lambda repressor-like, DNA-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.