3FW0 | pdb_00003fw0

Structure of Peptidyl-alpha-hydroxyglycine alpha-Amidating Lyase (PAL) bound to alpha-hydroxyhippuric acid (non-peptidic substrate)

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	HTH_3	e3fw0A1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: HTH_3	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.120.10.30	Mainly Beta	6 Propeller	Neuraminidase	TolB, C-terminal domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01436	NHL repeat (NHL)	NHL repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Peptidyl-glycine alpha-amidating monooxygenase	amidine-lyase activity catalytic activity, acting on a protein lyase activity peptidylamidoglycolate lyase activity catalytic activity carbon-nitrogen lyase activity cation binding transition metal ion binding copper ion binding ion binding binding metal ion binding small molecule binding peptidylglycine monooxygenase activity amidine-lyase activity catalytic activity, acting on a protein lyase activity peptidylamidoglycolate lyase activity catalytic activity carbon-nitrogen lyase activity cation binding transition metal ion binding copper ion binding ion binding binding metal ion binding small molecule binding peptidylglycine monooxygenase activity oxidoreductase activity monooxygenase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen identical protein binding protein binding calcium ion binding chromatin binding organic acid binding carbohydrate binding vitamin binding anion binding monosaccharide binding carboxylic acid binding heterocyclic compound binding L-ascorbic acid binding kinase binding enzyme binding protein kinase binding zinc ion binding	response to stimulus response to chemical response to xenobiotic stimulus developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development metabolic process cellular process toxin metabolic process response to stimulus response to chemical response to xenobiotic stimulus developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development metabolic process cellular process toxin metabolic process secondary metabolic process mitotic nuclear division mitotic chromosome condensation organelle fission chromosome organization sister chromatid segregation mitotic cell cycle cellular component organization organelle organization nuclear division mitotic cell cycle process chromosome condensation mitotic sister chromatid segregation nuclear chromosome segregation cell cycle cellular component organization or biogenesis chromosome segregation cell cycle process cellular response to stimulus response to oxidative stress cellular response to chemical stimulus cellular response to stress response to stress cellular response to oxidative stress cellular response to chemical stress response to metal ion response to zinc ion limb development appendage development response to decreased oxygen levels response to hypoxia response to oxygen levels response to abiotic stimulus regulation of body fluid levels secretion transport mammary gland development gland development biological regulation establishment of localization body fluid secretion localization lactation regulation of biological quality fatty acid primary amide biosynthetic process biosynthetic process lipid biosynthetic process fatty acid derivative biosynthetic process primary metabolic process fatty acid primary amide metabolic process lipid metabolic process fatty acid derivative metabolic process peptide metabolic process response to copper ion regulation of cytoskeleton organization regulation of biological process regulation of cellular component organization regulation of cellular process regulation of actin filament-based process actin cytoskeleton organization regulation of organelle organization regulation of actin cytoskeleton organization actin filament-based process cytoskeleton organization multi-multicellular organism process maternal process involved in female pregnancy reproductive process multicellular organismal reproductive process female pregnancy multi-organism reproductive process fatty acid metabolic process long-chain fatty acid metabolic process oxoacid metabolic process carboxylic acid metabolic process organic acid metabolic process small molecule metabolic process monocarboxylic acid metabolic process catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process protein metabolic process macromolecule metabolic process response to corticosteroid response to lipid response to hormone response to steroid hormone response to endogenous stimulus response to glucocorticoid response to pH rhythmic process ovulation cycle ovulation cycle process peptide modification peptide amidation RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process response to estradiol response to oxygen-containing compound	somatodendritic compartment cell body cellular anatomical structure perikaryon neuronal cell body membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle secretory granule somatodendritic compartment cell body cellular anatomical structure perikaryon neuronal cell body membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle membraneless organelle intracellular membraneless organelle chromatin chromosome Golgi apparatus subcompartment Golgi apparatus organelle subcompartment trans-Golgi network perinuclear region of cytoplasm extracellular region extracellular space transport vesicle membrane transport vesicle membrane cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane organelle membrane condensed chromosome cell surface

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001258	NHL repeat	Repeat
A	IPR036939	Copper type II, ascorbate-dependent monooxygenase, N-terminal domain superfamily	Homologous Superfamily
A	IPR000323	Copper type II, ascorbate-dependent monooxygenase, N-terminal	Domain
A	IPR008977	PHM/PNGase F domain superfamily	Homologous Superfamily
A	IPR014783	Copper type II, ascorbate-dependent monooxygenase, histidine-cluster-2 conserved site	Conserved Site
A	IPR024548	Copper type II ascorbate-dependent monooxygenase, C-terminal	Domain
A	IPR011042	Six-bladed beta-propeller, TolB-like	Homologous Superfamily
A	IPR020611	Copper type II, ascorbate-dependent monooxygenase, histidine-cluster-1 conserved site	Conserved Site
A	IPR014784	Copper type II, ascorbate-dependent monooxygenase-like, C-terminal	Homologous Superfamily
A	IPR000720	Peptidylglycine alpha-hydroxylating monooxygenase/peptidyl-hydroxyglycine alpha-amidating lyase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.