3FUB
Crystal structure of GDNF-GFRalpha1 complex
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d3fubb_ | Small proteins | Cystine-knot cytokines | Cystine-knot cytokines | Transforming growth factor (TGF)-beta | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d3fubd_ | Small proteins | Cystine-knot cytokines | Cystine-knot cytokines | Transforming growth factor (TGF)-beta | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | GDNF receptor-like | 8038507 | 3000184 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | GDNF receptor-like | 8038507 | 3000184 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Cystine-knot cytokines | 8084508 | 3000846 | SCOP2B (2022-06-29) |
D | SCOP2 Family | Transforming growth factor (TGF)-beta | 8084507 | 4003433 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | Cystine-knot cytokines | 8084508 | 3000846 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GDNF | e3fubA3 | A: alpha superhelices | X: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like | H: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA | T: GDNF receptor | F: GDNF | ECOD (1.6) |
C | GDNF | e3fubC3 | A: alpha superhelices | X: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like | H: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA | T: GDNF receptor | F: GDNF | ECOD (1.6) |
B | TGF_beta | e3fubB1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
D | TGF_beta | e3fubD1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
D | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02351 | GDNF/GAS1 domain (GDNF) | GDNF/GAS1 domain | This cysteine rich domain is found in multiple copies in GNDF and GAS1 proteins. GDNF and neurturin (NTN) receptors are potent survival factors for sympathetic, sensory and central nervous system neurons [2]. GDNF and neurturin promote neuronal surv ... | Domain | |
PF00019 | Transforming growth factor beta like domain (TGF_beta) | Transforming growth factor beta like domain | - | Domain |