3FN9 | pdb_00003fn9

Crystal structure of putative beta-galactosidase from bacteroides fragilis

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	galactose-binding domain-like	8090650	3000087	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	beta-Galactosidase/glucuronidase domain-like	8090652	3002047	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	E set domains	8090656	3000070	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	(Trans)glycosidases	8090654	3000313	SCOP2B (2022-06-29)
D	SCOP2 Family	beta-Galactosidase N-terminal domain-like	8085983	4002476	SCOP2 (2022-06-29)
D	SCOP2 Family	beta-Galactosidase/glucuronidase domain	8090651	4007531	SCOP2 (2022-06-29)
D	SCOP2 Family	beta-glycanases	8090653	4003164	SCOP2 (2022-06-29)
D	SCOP2 Family	E-set domains of sugar-utilizing enzymes	8090655	4007565	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	galactose-binding domain-like	8090650	3000087	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	beta-Galactosidase/glucuronidase domain-like	8090652	3002047	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	(Trans)glycosidases	8090654	3000313	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	E set domains	8090656	3000070	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	(Trans)glycosidases	8090654	3000313	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	beta-Galactosidase/glucuronidase domain-like	8090652	3002047	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	E set domains	8090656	3000070	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	galactose-binding domain-like	8090650	3000087	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	(Trans)glycosidases	8090654	3000313	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	galactose-binding domain-like	8090650	3000087	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	beta-Galactosidase/glucuronidase domain-like	8090652	3002047	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	E set domains	8090656	3000070	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Peptidase_M49	e3fn9B4	A: alpha bundles	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (develop294)
D	Peptidase_M49	e3fn9D4	A: alpha bundles	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (develop294)
C	Peptidase_M49	e3fn9C4	A: alpha bundles	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (develop294)
A	Melibiase_C	e3fn9A3	A: alpha bundles	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: Melibiase_C	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.120.260	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding domain-like	CATH (4.3.0)
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
B	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
D	2.60.120.260	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding domain-like	CATH (4.3.0)
D	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
D	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
C	2.60.120.260	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding domain-like	CATH (4.3.0)
C	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
C	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
A	2.60.120.260	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding domain-like	CATH (4.3.0)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
A	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Putative beta-galactosidase	hydrolase activity, acting on glycosyl bonds beta-galactosidase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity galactosidase activity	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036156	Beta-Galactosidase/glucuronidase domain superfamily	Homologous Superfamily
A, B, C, D	IPR051913	Glycosyl Hydrolase 2 Domain-Containing Protein	Family
A, B, C, D	IPR006104	Glycosyl hydrolases family 2, sugar binding domain	Domain
A, B, C, D	IPR006102	Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich	Domain
A, B, C, D	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B, C, D	IPR006103	Glycoside hydrolase family 2, catalytic domain	Domain
A, B, C, D	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A, B, C, D	IPR006101	Glycoside hydrolase, family 2	Family
A, B, C, D	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily