3FBV | pdb_00003fbv

Crystal structure of the oligomer formed by the kinase-ribonuclease domain of Ire1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
NSCOP2B SuperfamilyIre1-RNaseL RNase domain-like 8089775 3002392 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyProtein kinase-like (PK-like) 8089777 3000066 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyIre1-RNaseL RNase domain-like 8089775 3002392 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyProtein kinase-like (PK-like) 8089777 3000066 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyProtein kinase-like (PK-like) 8089777 3000066 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyIre1-RNaseL RNase domain-like 8089775 3002392 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyIre1-RNaseL RNase domain-like 8089775 3002392 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyProtein kinase-like (PK-like) 8089777 3000066 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyProtein kinase-like (PK-like) 8089777 3000066 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyIre1-RNaseL RNase domain-like 8089775 3002392 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyProtein kinase-like (PK-like) 8089777 3000066 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyIre1-RNaseL RNase domain-like 8089775 3002392 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyIre1-RNaseL RNase domain-like 8089775 3002392 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyProtein kinase-like (PK-like) 8089777 3000066 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyProtein kinase-like (PK-like) 8089777 3000066 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyIre1-RNaseL RNase domain-like 8089775 3002392 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyProtein kinase-like (PK-like) 8089777 3000066 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyIre1-RNaseL RNase domain-like 8089775 3002392 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyProtein kinase-like (PK-like) 8089777 3000066 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyIre1-RNaseL RNase domain-like 8089775 3002392 SCOP2B (2022-06-29)
DSCOP2 FamilyIre1-RNaseL RNase domain-like 8048286 4006039 SCOP2 (2022-06-29)
DSCOP2 FamilyProtein kinases catalytic domain-like 8089776 4003661 SCOP2 (2022-06-29)
DSCOP2 SuperfamilyIre1-RNaseL RNase domain-like 8089775 3002392 SCOP2 (2022-06-29)
DSCOP2 SuperfamilyProtein kinase-like (PK-like) 8089777 3000066 SCOP2 (2022-06-29)
CSCOP2B SuperfamilyIre1-RNaseL RNase domain-like 8089775 3002392 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyProtein kinase-like (PK-like) 8089777 3000066 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyProtein kinase-like (PK-like) 8089777 3000066 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyIre1-RNaseL RNase domain-like 8089775 3002392 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyIre1-RNaseL RNase domain-like 8089775 3002392 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyProtein kinase-like (PK-like) 8089777 3000066 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
NRibonuc_2-5Ae3fbvN2 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: Nucleotidyltransferase substrate binding subunit/domainF: Ribonuc_2-5AECOD (1.6)
NPkinase_Tyre3fbvN1 A: a+b complex topologyX: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)H: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: Pkinase_TyrECOD (1.6)
MRibonuc_2-5Ae3fbvM2 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: Nucleotidyltransferase substrate binding subunit/domainF: Ribonuc_2-5AECOD (1.6)
MPkinase_Tyre3fbvM1 A: a+b complex topologyX: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)H: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: Pkinase_TyrECOD (1.6)
LRibonuc_2-5Ae3fbvL2 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: Nucleotidyltransferase substrate binding subunit/domainF: Ribonuc_2-5AECOD (1.6)
LPkinase_Tyre3fbvL1 A: a+b complex topologyX: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)H: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: Pkinase_TyrECOD (1.6)
KRibonuc_2-5Ae3fbvK2 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: Nucleotidyltransferase substrate binding subunit/domainF: Ribonuc_2-5AECOD (1.6)
KPkinase_Tyre3fbvK1 A: a+b complex topologyX: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)H: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: Pkinase_TyrECOD (1.6)
JRibonuc_2-5Ae3fbvJ2 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: Nucleotidyltransferase substrate binding subunit/domainF: Ribonuc_2-5AECOD (1.6)
JPkinase_Tyre3fbvJ1 A: a+b complex topologyX: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)H: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: Pkinase_TyrECOD (1.6)
IRibonuc_2-5Ae3fbvI2 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: Nucleotidyltransferase substrate binding subunit/domainF: Ribonuc_2-5AECOD (1.6)
IPkinase_Tyre3fbvI1 A: a+b complex topologyX: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)H: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: Pkinase_TyrECOD (1.6)
HRibonuc_2-5Ae3fbvH2 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: Nucleotidyltransferase substrate binding subunit/domainF: Ribonuc_2-5AECOD (1.6)
HPkinase_Tyre3fbvH1 A: a+b complex topologyX: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)H: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: Pkinase_TyrECOD (1.6)
GRibonuc_2-5Ae3fbvG2 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: Nucleotidyltransferase substrate binding subunit/domainF: Ribonuc_2-5AECOD (1.6)
GPkinase_Tyre3fbvG1 A: a+b complex topologyX: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)H: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: Pkinase_TyrECOD (1.6)
FRibonuc_2-5Ae3fbvF2 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: Nucleotidyltransferase substrate binding subunit/domainF: Ribonuc_2-5AECOD (1.6)
FPkinase_Tyre3fbvF1 A: a+b complex topologyX: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)H: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: Pkinase_TyrECOD (1.6)
ERibonuc_2-5Ae3fbvE2 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: Nucleotidyltransferase substrate binding subunit/domainF: Ribonuc_2-5AECOD (1.6)
EPkinase_Tyre3fbvE1 A: a+b complex topologyX: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)H: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: Pkinase_TyrECOD (1.6)
DRibonuc_2-5Ae3fbvD2 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: Nucleotidyltransferase substrate binding subunit/domainF: Ribonuc_2-5AECOD (1.6)
DPkinase_Tyre3fbvD1 A: a+b complex topologyX: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)H: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: Pkinase_TyrECOD (1.6)
CRibonuc_2-5Ae3fbvC2 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: Nucleotidyltransferase substrate binding subunit/domainF: Ribonuc_2-5AECOD (1.6)
CPkinase_Tyre3fbvC1 A: a+b complex topologyX: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)H: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: Pkinase_TyrECOD (1.6)
BRibonuc_2-5Ae3fbvB2 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: Nucleotidyltransferase substrate binding subunit/domainF: Ribonuc_2-5AECOD (1.6)
BPkinase_Tyre3fbvB1 A: a+b complex topologyX: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)H: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: Pkinase_TyrECOD (1.6)
ARibonuc_2-5Ae3fbvA2 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: Nucleotidyltransferase substrate binding subunit/domainF: Ribonuc_2-5AECOD (1.6)
APkinase_Tyre3fbvA1 A: a+b complex topologyX: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)H: Protein kinase/SAICAR synthase/ATP-graspT: Protein kinaseF: Pkinase_TyrECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
N3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (4.3.0)
N1.10.510.10 Mainly Alpha Orthogonal Bundle Transferase(Phosphotransferase) domain 1CATH (4.3.0)
N1.20.1440.180 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) KEN domainCATH (4.3.0)
M3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (4.3.0)
M1.10.510.10 Mainly Alpha Orthogonal Bundle Transferase(Phosphotransferase) domain 1CATH (4.3.0)
M1.20.1440.180 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) KEN domainCATH (4.3.0)
L3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (4.3.0)
L1.10.510.10 Mainly Alpha Orthogonal Bundle Transferase(Phosphotransferase) domain 1CATH (4.3.0)
L1.20.1440.180 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) KEN domainCATH (4.3.0)
K3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (4.3.0)
K1.10.510.10 Mainly Alpha Orthogonal Bundle Transferase(Phosphotransferase) domain 1CATH (4.3.0)
K1.20.1440.180 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) KEN domainCATH (4.3.0)
J3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (4.3.0)
J1.10.510.10 Mainly Alpha Orthogonal Bundle Transferase(Phosphotransferase) domain 1CATH (4.3.0)
J1.20.1440.180 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) KEN domainCATH (4.3.0)
I3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (4.3.0)
I1.10.510.10 Mainly Alpha Orthogonal Bundle Transferase(Phosphotransferase) domain 1CATH (4.3.0)
I1.20.1440.180 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) KEN domainCATH (4.3.0)
H3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (4.3.0)
H1.10.510.10 Mainly Alpha Orthogonal Bundle Transferase(Phosphotransferase) domain 1CATH (4.3.0)
H1.20.1440.180 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) KEN domainCATH (4.3.0)
G3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (4.3.0)
G1.10.510.10 Mainly Alpha Orthogonal Bundle Transferase(Phosphotransferase) domain 1CATH (4.3.0)
G1.20.1440.180 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) KEN domainCATH (4.3.0)
F3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (4.3.0)
F1.10.510.10 Mainly Alpha Orthogonal Bundle Transferase(Phosphotransferase) domain 1CATH (4.3.0)
F1.20.1440.180 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) KEN domainCATH (4.3.0)
E3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (4.3.0)
E1.10.510.10 Mainly Alpha Orthogonal Bundle Transferase(Phosphotransferase) domain 1CATH (4.3.0)
E1.20.1440.180 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) KEN domainCATH (4.3.0)
D3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (4.3.0)
D1.10.510.10 Mainly Alpha Orthogonal Bundle Transferase(Phosphotransferase) domain 1CATH (4.3.0)
D1.20.1440.180 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) KEN domainCATH (4.3.0)
C3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (4.3.0)
C1.10.510.10 Mainly Alpha Orthogonal Bundle Transferase(Phosphotransferase) domain 1CATH (4.3.0)
C1.20.1440.180 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) KEN domainCATH (4.3.0)
B3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (4.3.0)
B1.10.510.10 Mainly Alpha Orthogonal Bundle Transferase(Phosphotransferase) domain 1CATH (4.3.0)
B1.20.1440.180 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) KEN domainCATH (4.3.0)
A3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (4.3.0)
A1.10.510.10 Mainly Alpha Orthogonal Bundle Transferase(Phosphotransferase) domain 1CATH (4.3.0)
A1.20.1440.180 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) KEN domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF06479Ribonuclease 2-5A (Ribonuc_2-5A)Ribonuclease 2-5A- Family
A, B, C, D, E
PF00069Protein kinase domain (Pkinase)Protein kinase domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Serine/threonine-protein kinase/endoribonuclease IRE1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR018391Pyrrolo-quinoline quinone beta-propeller repeatRepeat
A, B, C, D, E
IPR038357KEN domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR045133Serine/threonine-protein kinase/endoribonuclease IRE1/2-likeFamily
A, B, C, D, E
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
A, B, C, D, E
IPR000719Protein kinase domainDomain
A, B, C, D, E
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR010513KEN domainDomain
A, B, C, D, E
IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR008271Serine/threonine-protein kinase, active siteActive Site

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B, C, D, E
SEP Parent Component: SER

RESIDAA0037

PSI-MOD :  O-phospho-L-serine MOD:00046
A, B, C, D, E
TPO Parent Component: THR

RESIDAA0037 , AA0038

PSI-MOD :  O-phospho-L-serine MOD:00046 , O-phospho-L-threonine MOD:00047