3ETB
Crystal structure of the engineered neutralizing antibody M18 complexed with anthrax protective antigen domain 4
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth J] | SCOP2B Superfamily | FIP-like | 8054214 | 3002056 | SCOP2B (2022-06-29) |
F [auth K] | SCOP2B Superfamily | FIP-like | 8054214 | 3002056 | SCOP2B (2022-06-29) |
G [auth L] | SCOP2B Superfamily | FIP-like | 8054214 | 3002056 | SCOP2B (2022-06-29) |
H [auth M] | SCOP2B Superfamily | FIP-like | 8054214 | 3002056 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth F] | V-set_8 | e3etbF2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
A [auth F] | V-set | e3etbF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
B [auth G] | V-set_8 | e3etbG2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
B [auth G] | V-set | e3etbG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
C [auth H] | V-set_8 | e3etbH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
C [auth H] | V-set | e3etbH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
D [auth I] | V-set_8 | e3etbI2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
D [auth I] | V-set | e3etbI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
E [auth J] | EUF07840 | e3etbJ1 | A: beta sandwiches | X: Ig-like domain in anthrax protective antigen (From Topology) | H: Ig-like domain in anthrax protective antigen (From Topology) | T: Ig-like domain in anthrax protective antigen | F: EUF07840 | ECOD (1.6) |
F [auth K] | EUF07840 | e3etbK1 | A: beta sandwiches | X: Ig-like domain in anthrax protective antigen (From Topology) | H: Ig-like domain in anthrax protective antigen (From Topology) | T: Ig-like domain in anthrax protective antigen | F: EUF07840 | ECOD (1.6) |
G [auth L] | EUF07840 | e3etbL1 | A: beta sandwiches | X: Ig-like domain in anthrax protective antigen (From Topology) | H: Ig-like domain in anthrax protective antigen (From Topology) | T: Ig-like domain in anthrax protective antigen | F: EUF07840 | ECOD (1.6) |
H [auth M] | EUF07840 | e3etbM1 | A: beta sandwiches | X: Ig-like domain in anthrax protective antigen (From Topology) | H: Ig-like domain in anthrax protective antigen (From Topology) | T: Ig-like domain in anthrax protective antigen | F: EUF07840 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth F] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B [auth G] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D [auth I] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
E [auth J] | 2.60.40.810 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
F [auth K] | 2.60.40.810 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
G [auth L] | 2.60.40.810 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
H [auth M] | 2.60.40.810 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth F], B [auth G], C [auth H], D [auth I] | M18, anti-anthrax PA-63, neutralizing | SCFV-KAPPA-HEAVY | Mus musculus (house mouse) | IGKV10-96*01, IGKJ1*01, IGHV1-82*01, IGHJ4*01 | V-DOMAIN V-KAPPA, V-DOMAIN VH | IG | SCFV-KAPPA-HEAVY | IMGT (202436-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
E [auth J], F [auth K], G [auth L], H [auth M] | PF20835 | Anthrax protective antigen, immunoglobulin-like domain (PA_Ig-like) | Anthrax protective antigen, immunoglobulin-like domain | Anthrax protective antigen (PA) is one of the three proteins forming the anthrax toxin. It is involved in the first step of toxin entry into host cells, enabling lethal factor (LF) and oedema factor (EF) to cross to the cytosol. PA undergoes cleavage ... | Domain |