3EH0
Crystal Structure of LpxD from Escherichia coli
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Trimeric LpxA-like enzymes | 8091508 | 3001804 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | MurE/MurF N-terminal domain | 8091500 | 3000146 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Trimeric LpxA-like enzymes | 8091508 | 3001804 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | MurE/MurF N-terminal domain | 8091500 | 3000146 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | MurE/MurF N-terminal domain | 8091500 | 3000146 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Trimeric LpxA-like enzymes | 8091508 | 3001804 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Hexapep_2_1 | e3eh0A2 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: Hexapep_2_1 | ECOD (1.6) |
A | Hexapep | e3eh0A1 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: Hexapep | ECOD (1.6) |
A | LpxD | e3eh0A3 | A: a/b three-layered sandwiches | X: MurF and HprK N-domain-like (From Topology) | H: MurF and HprK N-domain-like (From Topology) | T: MurF and HprK N-domain-like | F: LpxD | ECOD (1.6) |
B | Hexapep_2_1 | e3eh0B1 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: Hexapep_2_1 | ECOD (1.6) |
B | Hexapep | e3eh0B2 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: Hexapep | ECOD (1.6) |
B | LpxD | e3eh0B3 | A: a/b three-layered sandwiches | X: MurF and HprK N-domain-like (From Topology) | H: MurF and HprK N-domain-like (From Topology) | T: MurF and HprK N-domain-like | F: LpxD | ECOD (1.6) |
C | Hexapep_2_1 | e3eh0C1 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: Hexapep_2_1 | ECOD (1.6) |
C | Hexapep | e3eh0C2 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: Hexapep | ECOD (1.6) |
C | LpxD | e3eh0C3 | A: a/b three-layered sandwiches | X: MurF and HprK N-domain-like (From Topology) | H: MurF and HprK N-domain-like (From Topology) | T: MurF and HprK N-domain-like | F: LpxD | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00132 | Bacterial transferase hexapeptide (six repeats) (Hexapep) | Bacterial transferase hexapeptide (six repeats) | - | Repeat | |
PF04613 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD (LpxD) | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011004 | Trimeric LpxA-like superfamily | Homologous Superfamily | |
IPR007691 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD | Family | |
IPR018357 | Hexapeptide transferase, conserved site | Conserved Site | |
IPR020573 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region | Domain | |
IPR001451 | Hexapeptide repeat | Repeat |