3ECP | pdb_00003ecp

Crystal Structure Of Tn5 Transposase Complexed With 5' Phosphorylated Transposon End DNA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3ecpa2	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Ribonuclease H-like	Transposase inhibitor (Tn5 transposase)	Transposase inhibitor (Tn5 transposase)	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
A	d3ecpa3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Ribonuclease H-like	8043811	3000143	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Dimer_Tnp_Tn5	e3ecpA1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Dimer_Tnp_Tn5	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.246.40	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.3.0)
A	3.90.350.10	Alpha Beta	Alpha-Beta Complex	Transposase Inhibitor Protein From Tn5	Chain A, domain 1	CATH (4.3.0)
A	1.10.740.10	Mainly Alpha	Orthogonal Bundle	Transferase Inhibitor Protein From Tn5	Chain A, domain2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Tn5 transposase	DNA binding binding nucleic acid binding transposase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity hydrolase activity endonuclease activity nuclease activity cation binding ion binding metal ion binding small molecule binding	nucleobase-containing compound metabolic process DNA recombination cellular process metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process transposition DNA transposition nucleic acid metabolic process	-
B	DNA transferred strand	-	-	-
C	DNA non-transferred strand	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR038215	Transposase, Tn5-like, N-terminal domain superfamily	Homologous Superfamily
A	IPR014735	Transposase, Tn5-like, N-terminal	Domain
A	IPR014737	Transposase, Tn5-like, C-terminal	Homologous Superfamily
A	IPR047768	Transposase for transposon Tn5-like	Family
A	IPR002559	Transposase IS4-like domain	Domain
A	IPR054836	Transposase for transposon Tn5	Family
A	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.