3EBL | pdb_00003ebl

Crystal Structure of Rice GID1 complexed with GA4

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	zf-CCCH_4	e3eblF1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: zf-CCCH_4	ECOD (develop294)
E	Lipase_3	e3eblE2	A: alpha bundles	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lipase_3	ECOD (develop294)
D	zf-CCCH_4	e3eblD1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: zf-CCCH_4	ECOD (develop294)
C	zf-CCCH_4	e3eblC1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: zf-CCCH_4	ECOD (develop294)
B	zf-CCCH_4	e3eblB1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: zf-CCCH_4	ECOD (develop294)
A	Ribosomal_L12_N	e3eblA2	A: alpha bundles	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: Ribosomal_L12_N	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)
E	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)
D	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)
C	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)
B	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)
A	3.40.50.1820	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Alpha/Beta hydrolase fold, catalytic domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF07859	alpha/beta hydrolase fold (Abhydrolase_3)	alpha/beta hydrolase fold	This catalytic domain is found in a very wide range of enzymes.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Gibberellin receptor GID1	organic acid binding binding ion binding anion binding isoprenoid binding gibberellin binding lipid binding carboxylic acid binding hormone binding small molecule binding hydrolase activity catalytic activity	cellular response to stimulus cellular response to gibberellin stimulus regulation of cellular process response to lipid response to stimulus signaling hormone-mediated signaling pathway cell communication response to gibberellin cellular response to endogenous stimulus response to hormone signal transduction cellular response to hormone stimulus gibberellin mediated signaling pathway cellular response to stimulus cellular response to gibberellin stimulus regulation of cellular process response to lipid response to stimulus signaling hormone-mediated signaling pathway cell communication response to gibberellin cellular response to endogenous stimulus response to hormone signal transduction cellular response to hormone stimulus gibberellin mediated signaling pathway regulation of biological process response to endogenous stimulus gibberellic acid mediated signaling pathway biological regulation response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to chemical stimulus response to chemical cellular response to lipid cellular process carbohydrate metabolic process biosynthetic process oligosaccharide biosynthetic process carbohydrate biosynthetic process oligosaccharide metabolic process raffinose family oligosaccharide biosynthetic process primary metabolic process metabolic process developmental process multicellular organismal process plant organ development reproductive system development reproductive process flower development developmental process involved in reproduction post-embryonic plant organ morphogenesis post-embryonic plant morphogenesis plant organ morphogenesis anatomical structure morphogenesis multicellular organism development reproductive shoot system development anatomical structure development post-embryonic plant organ development reproductive structure development post-embryonic development shoot system development floral organ morphogenesis system development floral organ development positive regulation of cell communication positive regulation of signal transduction positive regulation of gibberellic acid mediated signaling pathway positive regulation of biological process regulation of signal transduction positive regulation of response to stimulus positive regulation of cellular process regulation of signaling regulation of gibberellic acid mediated signaling pathway regulation of response to stimulus regulation of cell communication positive regulation of signaling	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR033140	Lipase, GDXG, putative serine active site	Active Site
A, B, C, D, E A, B, C, D, E, F	IPR002168	Lipase, GDXG, putative histidine active site	Active Site
A, B, C, D, E A, B, C, D, E, F	IPR013094	Alpha/beta hydrolase fold-3	Domain
A, B, C, D, E A, B, C, D, E, F	IPR050466	Diverse Carboxylesterases and Gibberellin Receptors	Family
A, B, C, D, E A, B, C, D, E, F	IPR029058	Alpha/Beta hydrolase fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.