3DUK | pdb_00003duk

CRYSTAL STRUCTURE OF A NTF2-LIKE PROTEIN OF UNKNOWN FUNCTION (MFLA_0564) FROM METHYLOBACILLUS FLAGELLATUS KT AT 2.200 A RESOLUTION

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d3dukf1	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
F	d3dukf2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
E	d3duke1	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
E	d3duke2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
D	d3dukd1	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
D	d3dukd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
C	d3dukc1	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
C	d3dukc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
B	d3dukb1	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
B	d3dukb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
A	d3duka1	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
A	d3duka2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	NTF2-like	8059680	3000472	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	NTF2-like	8059680	3000472	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	NTF2-like	8059680	3000472	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	NTF2-like	8059680	3000472	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	NTF2-like	8059680	3000472	SCOP2B (2022-06-29)
A	SCOP2 Family	Sbal0622-like	8059679	4002743	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	NTF2-like	8059680	3000472	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Lumazine_bd_2	e3dukF1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: Lumazine_bd_2	ECOD (1.6)
E	Lumazine_bd_2	e3dukE1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: Lumazine_bd_2	ECOD (1.6)
D	Lumazine_bd_2	e3dukD1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: Lumazine_bd_2	ECOD (1.6)
C	Lumazine_bd_2	e3dukC1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: Lumazine_bd_2	ECOD (1.6)
B	Lumazine_bd_2	e3dukB1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: Lumazine_bd_2	ECOD (1.6)
A	Lumazine_bd_2	e3dukA1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: Lumazine_bd_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
E	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
D	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
C	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
B	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
A	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF12893	Putative lumazine-binding (Lumazine_bd_2)	Putative lumazine-binding	This is a family of uncharacterised proteins. However, the family belongs to the NTF2-like superfamily of various enzymes, and some of the members of the family are putative dehydrogenases.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR039437	Aldolase FrzH/putative lumazine-binding	Family
A, B, C, D, E A, B, C, D, E, F	IPR032710	NTF2-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.