3DUK | pdb_00003duk

CRYSTAL STRUCTURE OF A NTF2-LIKE PROTEIN OF UNKNOWN FUNCTION (MFLA_0564) FROM METHYLOBACILLUS FLAGELLATUS KT AT 2.200 A RESOLUTION

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3duka1	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
A	d3duka2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
B	d3dukb1	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
B	d3dukb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
C	d3dukc1	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
C	d3dukc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
D	d3dukd1	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
D	d3dukd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
E	d3duke1	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
E	d3duke2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
F	d3dukf1	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)
F	d3dukf2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Methylobacillus flagellatus KT ) [TaxId: 265072 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Sbal0622-like	8059679	4002743	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	NTF2-like	8059680	3000472	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	NTF2-like	8059680	3000472	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	NTF2-like	8059680	3000472	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	NTF2-like	8059680	3000472	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	NTF2-like	8059680	3000472	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	NTF2-like	8059680	3000472	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Thioesterase	e3dukA1	A: a/b three-layered sandwiches	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleic acid-binding protein	F: Thioesterase	ECOD (v294.1)
B	IL7	e3dukB1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: IL7	ECOD (v294.1)
C	IL7	e3dukC1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: IL7	ECOD (v294.1)
D	IL7	e3dukD1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: IL7	ECOD (v294.1)
E	IL7	e3dukE1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: IL7	ECOD (v294.1)
F	IL7	e3dukF1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: IL7	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
B	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
C	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
D	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
E	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
F	3.10.450.50	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF12893	Putative lumazine-binding (Lumazine_bd_2)	Putative lumazine-binding	This is a family of uncharacterised proteins. However, the family belongs to the NTF2-like superfamily of various enzymes, and some of the members of the family are putative dehydrogenases.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR039437	Aldolase FrzH/putative lumazine-binding	Family
A, B, C, D, E A, B, C, D, E, F	IPR032710	NTF2-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.