3DMI | pdb_00003dmi

Crystallization and Structural Analysis of Cytochrome c6 from the Diatom Phaeodactylum tricornutum at 1.5 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3dmia_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	automated matches	(Phaeodactylum tricornutum ) [TaxId: 2850 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Monodomain cytochrome c	8068550	4000635	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cytochrome c	8068551	3000815	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Pkinase	e3dmiA1	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: Probable bacterial effector-binding domain	T: Probable bacterial effector-binding domain	F: Pkinase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	cytochrome c6	binding tetrapyrrole binding heme binding electron transfer activity cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	photosynthesis metabolic process cellular process	membrane-bounded organelle intracellular anatomical structure plastid intracellular membraneless organelle intracellular membrane-bounded organelle plastid thylakoid plastid thylakoid lumen intracellular organelle chloroplast thylakoid lumen cellular anatomical structure organelle chloroplast thylakoid membraneless organelle cytoplasm membrane-bounded organelle intracellular anatomical structure plastid intracellular membraneless organelle intracellular membrane-bounded organelle plastid thylakoid plastid thylakoid lumen intracellular organelle chloroplast thylakoid lumen cellular anatomical structure organelle chloroplast thylakoid membraneless organelle cytoplasm thylakoid lumen thylakoid chloroplast

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR036909	Cytochrome c-like domain superfamily	Homologous Superfamily
A	IPR009056	Cytochrome c-like domain	Domain
A	IPR023655	Cytochrome c6	Family
A	IPR008168	Cytochrome c, class IC	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.