3DHG | pdb_00003dhg

Crystal Structure of Toluene 4-Monoxygenase Hydroxylase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d3dhgc_	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	TmoB-like	automated matches	automated matches	(Ectopseudomonas mendocina ) [TaxId: 300 ],	SCOPe (2.08)
F	d3dhgf_	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	TmoB-like	automated matches	automated matches	(Ectopseudomonas mendocina ) [TaxId: 300 ],	SCOPe (2.08)
A	d3dhga_	All alpha proteins	Ferritin-like	Ferritin-like	Ribonucleotide reductase-like	automated matches	(Ectopseudomonas mendocina ) [TaxId: 300 ],	SCOPe (2.08)
D	d3dhgd_	All alpha proteins	Ferritin-like	Ferritin-like	Ribonucleotide reductase-like	automated matches	(Ectopseudomonas mendocina ) [TaxId: 300 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	TmoB-like	8067866	3001226	SCOP2B (2022-06-29)
F	SCOP2 Family	TmoB-like	8067865	4002430	SCOP2 (2022-06-29)
F	SCOP2 Superfamily	TmoB-like	8067866	3001226	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8067870	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8067870	3001658	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ferritin-like	8067860	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8067860	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Thioesterase	e3dhgC1	A: a/b three-layered sandwiches	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleic acid-binding protein	F: Thioesterase	ECOD (v294.1)
F	IL7	e3dhgF1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: IL7	ECOD (v294.1)
B	Thioesterase	e3dhgB1	A: a/b three-layered sandwiches	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleic acid-binding protein	F: Thioesterase	ECOD (v294.1)
E	IL7	e3dhgE1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: IL7	ECOD (v294.1)
A	Thioesterase	e3dhgA1	A: a/b three-layered sandwiches	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleic acid-binding protein	F: Thioesterase	ECOD (v294.1)
D	IL7	e3dhgD1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: IL7	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.10.20.270	Alpha Beta	Roll	Ubiquitin-like (UB roll)	TmoB-like	CATH (4.3.0)
F	3.10.20.270	Alpha Beta	Roll	Ubiquitin-like (UB roll)	TmoB-like	CATH (4.3.0)
B	1.10.620.20	Mainly Alpha	Orthogonal Bundle	Ribonucleotide Reductase, subunit A	Ribonucleotide Reductase, subunit A	CATH (4.3.0)
E	1.10.620.20	Mainly Alpha	Orthogonal Bundle	Ribonucleotide Reductase, subunit A	Ribonucleotide Reductase, subunit A	CATH (4.3.0)
A	1.10.620.20	Mainly Alpha	Orthogonal Bundle	Ribonucleotide Reductase, subunit A	Ribonucleotide Reductase, subunit A	CATH (4.3.0)
D	1.10.620.20	Mainly Alpha	Orthogonal Bundle	Ribonucleotide Reductase, subunit A	Ribonucleotide Reductase, subunit A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, F	toluene 4-monooxygenase hydroxylase gamma subunit	oxidoreductase activity monooxygenase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen catalytic activity toluene 4-monooxygenase activity	cellular response to stimulus catabolic process benzene-containing compound metabolic process response to stimulus hydrocarbon catabolic process cellular response to xenobiotic stimulus xenobiotic catabolic process hydrocarbon metabolic process xenobiotic metabolic process response to xenobiotic stimulus cellular response to chemical stimulus response to chemical toluene catabolic process metabolic process cellular response to stimulus catabolic process benzene-containing compound metabolic process response to stimulus hydrocarbon catabolic process cellular response to xenobiotic stimulus xenobiotic catabolic process hydrocarbon metabolic process xenobiotic metabolic process response to xenobiotic stimulus cellular response to chemical stimulus response to chemical toluene catabolic process metabolic process cellular process toluene metabolic process toluene-containing compound catabolic process	-
B, E	toluene 4-monooxygenase hydroxylase beta subunit	oxidoreductase activity monooxygenase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen catalytic activity toluene 4-monooxygenase activity	cellular response to stimulus catabolic process benzene-containing compound metabolic process response to stimulus hydrocarbon catabolic process cellular response to xenobiotic stimulus xenobiotic catabolic process hydrocarbon metabolic process xenobiotic metabolic process response to xenobiotic stimulus cellular response to chemical stimulus response to chemical toluene catabolic process metabolic process cellular response to stimulus catabolic process benzene-containing compound metabolic process response to stimulus hydrocarbon catabolic process cellular response to xenobiotic stimulus xenobiotic catabolic process hydrocarbon metabolic process xenobiotic metabolic process response to xenobiotic stimulus cellular response to chemical stimulus response to chemical toluene catabolic process metabolic process cellular process toluene metabolic process toluene-containing compound catabolic process	-
A, D	toluene 4-monooxygenase hydroxylase alpha subunit	oxidoreductase activity monooxygenase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen catalytic activity toluene 4-monooxygenase activity cation binding ion binding binding metal ion binding small molecule binding	cellular response to stimulus catabolic process benzene-containing compound metabolic process response to stimulus hydrocarbon catabolic process cellular response to xenobiotic stimulus xenobiotic catabolic process hydrocarbon metabolic process xenobiotic metabolic process response to xenobiotic stimulus cellular response to chemical stimulus response to chemical toluene catabolic process metabolic process cellular response to stimulus catabolic process benzene-containing compound metabolic process response to stimulus hydrocarbon catabolic process cellular response to xenobiotic stimulus xenobiotic catabolic process hydrocarbon metabolic process xenobiotic metabolic process response to xenobiotic stimulus cellular response to chemical stimulus response to chemical toluene catabolic process metabolic process cellular process toluene metabolic process toluene-containing compound catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, F	IPR036713	TmoB-like superfamily	Homologous Superfamily
C, F	IPR009355	Toluene-4-monooxygenase system B	Family
B, E	IPR009078	Ferritin-like superfamily	Homologous Superfamily
B, E	IPR003430	Propane/methane/phenol/toluene hydroxylase	Family
B, E	IPR012078	Methane/phenol monooxygenase, hydroxylase component	Family
B, E	IPR012348	Ribonucleotide reductase-like	Homologous Superfamily
A, D	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, D	IPR003430	Propane/methane/phenol/toluene hydroxylase	Family
A, D	IPR012348	Ribonucleotide reductase-like	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.