3DCX | pdb_00003dcx

Crystal structure of a duf1696 family protein with a pleckstrin-homology domain (shew_0819) from shewanella loihica pv-4 at 2.00 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d3dcxe_	All beta proteins	PH domain-like barrel	PH domain-like	BPHL domain	Uncharacterized protein Shew0819	(Shewanella loihica PV-4 ) [TaxId: 323850 ],	SCOPe (2.08)
D	d3dcxd_	All beta proteins	PH domain-like barrel	PH domain-like	BPHL domain	Uncharacterized protein Shew0819	(Shewanella loihica PV-4 ) [TaxId: 323850 ],	SCOPe (2.08)
C	d3dcxc_	All beta proteins	PH domain-like barrel	PH domain-like	BPHL domain	Uncharacterized protein Shew0819	(Shewanella loihica PV-4 ) [TaxId: 323850 ],	SCOPe (2.08)
B	d3dcxb_	All beta proteins	PH domain-like barrel	PH domain-like	BPHL domain	Uncharacterized protein Shew0819	(Shewanella loihica PV-4 ) [TaxId: 323850 ],	SCOPe (2.08)
A	d3dcxa1	All beta proteins	PH domain-like barrel	PH domain-like	BPHL domain	Uncharacterized protein Shew0819	(Shewanella loihica PV-4 ) [TaxId: 323850 ],	SCOPe (2.08)
A	d3dcxa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Shewanella loihica PV-4 ) [TaxId: 323850 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	PH domain-like	8040648	3000134	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PH domain-like	8040648	3000134	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PH domain-like	8040648	3000134	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PH domain-like	8040648	3000134	SCOP2B (2022-06-29)
A	SCOP2 Family	BPHL domain	8028269	4001832	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PH domain-like	8040648	3000134	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	Rieske	e3dcxE1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Rieske	ECOD (v294.1)
D	Rieske	e3dcxD1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Rieske	ECOD (v294.1)
C	Rieske	e3dcxC1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Rieske	ECOD (v294.1)
B	Rieske	e3dcxB1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Rieske	ECOD (v294.1)
A	bPH_1	e3dcxA1	A: beta barrels	X: PH domain-like	H: PH domain-like	T: PH domain-like	F: bPH_1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	2.30.29.50	Mainly Beta	Roll	PH-domain like	Bacterial Pleckstrin homology domain	CATH (4.3.0)
D	2.30.29.50	Mainly Beta	Roll	PH-domain like	Bacterial Pleckstrin homology domain	CATH (4.3.0)
C	2.30.29.50	Mainly Beta	Roll	PH-domain like	Bacterial Pleckstrin homology domain	CATH (4.3.0)
B	2.30.29.50	Mainly Beta	Roll	PH-domain like	Bacterial Pleckstrin homology domain	CATH (4.3.0)
A	2.30.29.50	Mainly Beta	Roll	PH-domain like	Bacterial Pleckstrin homology domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E	PF08000	Bacterial PH domain (bPH_1)	Bacterial PH domain	This family contains many bacterial hypothetical proteins. The structures of Swiss:A1SD03, PDB:3hsa, and Swiss:A3QB43, PDB:3dcx, show similarities to the PH or pleckstrin homology domain. First evidence of PH-like domains in bacteria suggests role in ...	This family contains many bacterial hypothetical proteins. The structures of Swiss:A1SD03, PDB:3hsa, and Swiss:A3QB43, PDB:3dcx, show similarities to the PH or pleckstrin homology domain. First evidence of PH-like domains in bacteria suggests role in cell envelope stress response [1].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR012544	Bacterial Pleckstrin homology domain	Domain
A, B, C, D, E	IPR037063	Bacterial Pleckstrin homology domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.