3D7A | pdb_00003d7a

Crystal structure of DUF54 family protein PH1010 from hyperthermophilic archaea Pyrococcus horikoshii OT3

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd3d7ab_ Alpha and beta proteins (a+b) RL5-like RL5-like automated matches automated matches (Pyrococcus horikoshii ) [TaxId: 53953 ], SCOPe (2.08)
Ad3d7aa_ Alpha and beta proteins (a+b) RL5-like RL5-like automated matches automated matches (Pyrococcus horikoshii ) [TaxId: 53953 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyRL5-like 8063646 3001709 SCOP2B (2022-06-29)
ASCOP2 FamilySSO1042-like 8063645 4002138 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyRL5-like 8063646 3001709 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRNA_bindinge3d7aB1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: RNA_bindingECOD (1.6)
ARNA_bindinge3d7aA1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: RNA_bindingECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.30.1440.10 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5 Chain: A,CATH (4.3.0)
A3.30.1440.10 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5 Chain: A,CATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
A, B
IPR002739RNA-binding protein PAB1135-likeFamily