3D3R | pdb_00003d3r

Crystal structure of the hydrogenase assembly chaperone HypC/HupF family protein from Shewanella oneidensis MR-1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d3d3rb2	All beta proteins	OB-fold	HupF/HypC-like	HupF/HypC-like	Hydrogenase expression/formation protein HypC	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
B	d3d3rb3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
A	d3d3ra1	All beta proteins	OB-fold	HupF/HypC-like	HupF/HypC-like	Hydrogenase expression/formation protein HypC	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
A	d3d3ra2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	HypC/PAN OB-fold domain-like	8040443	3000354	SCOP2B (2022-06-29)
A	SCOP2 Family	HupF/HypC-like	8028064	4001773	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	HypC/PAN OB-fold domain-like	8040443	3000354	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	HupF_HypC	e3d3rB1	A: beta barrels	X: OB-fold	H: HupF/HypC-like (From Topology)	T: HupF/HypC-like	F: HupF_HypC	ECOD (1.6)
A	HupF_HypC	e3d3rA1	A: beta barrels	X: OB-fold	H: HupF/HypC-like (From Topology)	T: HupF/HypC-like	F: HupF_HypC	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.30.30.140	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
A	2.30.30.140	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF01455	HupF/HypC family (HupF_HypC)	HupF/HypC family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Hydrogenase assembly chaperone hypC/hupF	binding carbon dioxide binding small molecule binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR001109	Hydrogenase expression/formation protein, HupF/HypC	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.