Annotations: 3CG0

Crystal structure of signal receiver domain of modulated diguanylate cyclase from Desulfovibrio desulfuricans G20, an example of alternate folding

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d3cg0d1	Alpha and beta proteins (a/b)	Flavodoxin-like	CheY-like	automated matches	automated matches	(Oleidesulfovibrio alaskensis G20 ) [TaxId: 207559 ],	SCOPe (2.08)
D	d3cg0d2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Oleidesulfovibrio alaskensis G20 ) [TaxId: 207559 ],	SCOPe (2.08)
C	d3cg0c1	Alpha and beta proteins (a/b)	Flavodoxin-like	CheY-like	automated matches	automated matches	(Oleidesulfovibrio alaskensis G20 ) [TaxId: 207559 ],	SCOPe (2.08)
C	d3cg0c2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Oleidesulfovibrio alaskensis G20 ) [TaxId: 207559 ],	SCOPe (2.08)
B	d3cg0b1	Alpha and beta proteins (a/b)	Flavodoxin-like	CheY-like	automated matches	automated matches	(Oleidesulfovibrio alaskensis G20 ) [TaxId: 207559 ],	SCOPe (2.08)
B	d3cg0b2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Oleidesulfovibrio alaskensis G20 ) [TaxId: 207559 ],	SCOPe (2.08)
A	d3cg0a1	Alpha and beta proteins (a/b)	Flavodoxin-like	CheY-like	automated matches	automated matches	(Oleidesulfovibrio alaskensis G20 ) [TaxId: 207559 ],	SCOPe (2.08)
A	d3cg0a2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Oleidesulfovibrio alaskensis G20 ) [TaxId: 207559 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	CheY-like	8072860	3001156	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	CheY-like	8072860	3001156	SCOP2B (2022-06-29)
B	SCOP2 Family	CheY-related	8072859	4003632	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	CheY-like	8072860	3001156	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	CheY-like	8072860	3001156	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Me-amine-dh_H	e3cg0D1	A: beta barrels	X: HTH	H: Nudix	T: Nudix	F: Me-amine-dh_H	ECOD (v294.2)
C	Me-amine-dh_H	e3cg0C1	A: beta barrels	X: HTH	H: Nudix	T: Nudix	F: Me-amine-dh_H	ECOD (v294.2)
B	Me-amine-dh_H	e3cg0B1	A: beta barrels	X: HTH	H: Nudix	T: Nudix	F: Me-amine-dh_H	ECOD (v294.2)
A	4HBT_2	e3cg0A1	A: beta barrels	X: Profilin-like	H: sensor domains	T: sensor domains	F: 4HBT_2	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (4.3.0)
C	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (4.3.0)
B	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (4.3.0)
A	3.40.50.2300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Response regulator	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00072	Response regulator receiver domain (Response_reg)	Response regulator receiver domain	This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor	catalytic activity	cellular response to stimulus regulation of biological process phosphorelay signal transduction system regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication cellular process signal transduction RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process cellular response to stimulus regulation of biological process phosphorelay signal transduction system regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication cellular process signal transduction RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR013767	PAS fold	Domain
A, B, C, D	IPR000014	PAS domain	Domain
A, B, C, D	IPR011006	CheY-like superfamily	Homologous Superfamily
A, B, C, D	IPR000160	GGDEF domain	Domain
A, B, C, D	IPR001789	Signal transduction response regulator, receiver domain	Domain
A, B, C, D	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
A, B, C, D	IPR035965	PAS domain superfamily	Homologous Superfamily
A, B, C, D	IPR000700	PAS-associated, C-terminal	Domain
A, B, C, D	IPR052155	Bacterial biofilm regulation/maintenance	Family
A, B, C, D	IPR029787	Nucleotide cyclase	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.