3CF4 | pdb_00003cf4

Structure of the CODH component of the M. barkeri ACDS complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth G]	SCOP2 Family	ACDE2-like	8064119	4002610	SCOP2 (2022-06-29)
B [auth G]	SCOP2 Superfamily	DHS-like NAD/FAD-binding domain	8064120	3001728	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth G]	Phage_endo_I	e3cf4G1	A: a/b three-layered sandwiches	X: Profilin-like	H: sensor domains	T: sensor domains	F: Phage_endo_I	ECOD (v294.1)
A	Prismane	e3cf4A1	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: ClpP/crotonase	T: ClpP/crotonase	F: Prismane	ECOD (v294.1)
A	Exop_C	e3cf4A4	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: ClpP/crotonase	T: ClpP/crotonase	F: Exop_C	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B [auth G]	3.40.50.1220	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	TPP-binding domain	CATH (4.3.0)
A	3.40.50.2030	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth G]	Acetyl-CoA decarboxylase/synthase epsilon subunit	-	cellular respiration oxoacid metabolic process energy derivation by oxidation of organic compounds carboxylic acid metabolic process alkane biosynthetic process acetate metabolic process methane metabolic process organic acid metabolic process generation of precursor metabolites and energy hydrocarbon metabolic process biosynthetic process energy derivation by oxidation of reduced inorganic compounds methanogenesis small molecule metabolic process cellular respiration oxoacid metabolic process energy derivation by oxidation of organic compounds carboxylic acid metabolic process alkane biosynthetic process acetate metabolic process methane metabolic process organic acid metabolic process generation of precursor metabolites and energy hydrocarbon metabolic process biosynthetic process energy derivation by oxidation of reduced inorganic compounds methanogenesis small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process hydrocarbon biosynthetic process anaerobic respiration methanogenesis, from acetate	-
A	Acetyl-CoA decarboxylase/synthase alpha subunit	cation binding transition metal ion binding ion binding binding nickel cation binding metal ion binding small molecule binding peroxidase activity oxidoreductase activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor catalytic activity iron ion binding anaerobic carbon-monoxide dehydrogenase activity cation binding transition metal ion binding ion binding binding nickel cation binding metal ion binding small molecule binding peroxidase activity oxidoreductase activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor catalytic activity iron ion binding anaerobic carbon-monoxide dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor oxidoreductase activity, acting on the aldehyde or oxo group of donors hydroxylamine reductase activity oxidoreductase activity, acting on other nitrogenous compounds as donors iron-sulfur cluster binding 4 iron, 4 sulfur cluster binding metal cluster binding	cellular respiration oxoacid metabolic process energy derivation by oxidation of organic compounds carboxylic acid metabolic process alkane biosynthetic process acetate metabolic process methane metabolic process organic acid metabolic process generation of precursor metabolites and energy hydrocarbon metabolic process biosynthetic process energy derivation by oxidation of reduced inorganic compounds methanogenesis small molecule metabolic process cellular respiration oxoacid metabolic process energy derivation by oxidation of organic compounds carboxylic acid metabolic process alkane biosynthetic process acetate metabolic process methane metabolic process organic acid metabolic process generation of precursor metabolites and energy hydrocarbon metabolic process biosynthetic process energy derivation by oxidation of reduced inorganic compounds methanogenesis small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process hydrocarbon biosynthetic process anaerobic respiration methanogenesis, from acetate nucleoside phosphate metabolic process primary metabolic process acetyl-CoA metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process sulfur compound metabolic process phosphorus metabolic process response to hydrogen peroxide response to oxidative stress response to stimulus response to stress response to chemical response to oxygen-containing compound response to reactive oxygen species	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth G]	IPR003704	Acetyl-CoA decarbonylase/synthase complex subunit epsilon	Family
B [auth G]	IPR029035	DHS-like NAD/FAD-binding domain superfamily	Homologous Superfamily
A	IPR016099	Prismane-like, alpha/beta-sandwich	Homologous Superfamily
A	IPR004137	Hydroxylamine reductase/Ni-containing CO dehydrogenase	Family
A	IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Conserved Site
A	IPR004460	Acetyl-CoA decarbonylase/synthase complex subunit alpha	Family
A	IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Domain
A	IPR011254	Prismane-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.