Structure of D2 subdomain of P97/VCP in complex with ADP
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | PolyA_pol | e3cf0A3 | A: alpha bundles | X: POZ domain | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PolyA_pol | ECOD (develop294) |
| C | PolyA_pol | e3cf0C3 | A: alpha bundles | X: POZ domain | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PolyA_pol | ECOD (develop294) |
| D | PolyA_pol | e3cf0D3 | A: alpha bundles | X: POZ domain | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PolyA_pol | ECOD (develop294) |
| E | PolyA_pol | e3cf0E3 | A: alpha bundles | X: POZ domain | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PolyA_pol | ECOD (develop294) |
| F | PolyA_pol | e3cf0F3 | A: alpha bundles | X: POZ domain | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PolyA_pol | ECOD (develop294) |
| G | PolyA_pol | e3cf0G3 | A: alpha bundles | X: POZ domain | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PolyA_pol | ECOD (develop294) |
| H | PolyA_pol | e3cf0H3 | A: alpha bundles | X: POZ domain | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PolyA_pol | ECOD (develop294) |
| I | PolyA_pol | e3cf0I3 | A: alpha bundles | X: POZ domain | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PolyA_pol | ECOD (develop294) |
| J | PolyA_pol | e3cf0J3 | A: alpha bundles | X: POZ domain | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PolyA_pol | ECOD (develop294) |
| K | PolyA_pol | e3cf0K3 | A: alpha bundles | X: POZ domain | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PolyA_pol | ECOD (develop294) |
| L | PolyA_pol | e3cf0L3 | A: alpha bundles | X: POZ domain | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PolyA_pol | ECOD (develop294) |
| M | PolyA_pol | e3cf0M3 | A: alpha bundles | X: POZ domain | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PolyA_pol | ECOD (develop294) |
| N | PolyA_pol | e3cf0N3 | A: alpha bundles | X: POZ domain | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PolyA_pol | ECOD (develop294) |
| B | PolyA_pol | e3cf0B3 | A: alpha bundles | X: POZ domain | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PolyA_pol | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain | |
| PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR003959 | ATPase, AAA-type, core | Domain | |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
| IPR029067 | CDC48 domain 2-like superfamily | Homologous Superfamily | |
| IPR005938 | AAA ATPase, CDC48 family | Family | |
| IPR003338 | CDC48, N-terminal subdomain | Domain | |
| IPR004201 | CDC48, domain 2 | Domain | |
| IPR009010 | Aspartate decarboxylase-like domain superfamily | Homologous Superfamily | |
| IPR003593 | AAA+ ATPase domain | Domain | |
| IPR041569 | AAA ATPase, AAA+ lid domain | Domain | |
| IPR050168 | AAA ATPase domain-containing protein | Family | |
| IPR003960 | ATPase, AAA-type, conserved site | Conserved Site |














