3CDD | pdb_00003cdd

Crystal structure of prophage MuSo2, 43 kDa tail protein from Shewanella oneidensis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d3cddf1	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, C-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
F	d3cddf2	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, N-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
E	d3cdde1	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, C-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
E	d3cdde2	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, N-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
E	d3cdde3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
D	d3cddd1	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, C-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
D	d3cddd2	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, N-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
C	d3cddc1	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, C-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
C	d3cddc2	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, N-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
B	d3cddb1	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, C-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
B	d3cddb2	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, N-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
A	d3cdda1	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, C-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
A	d3cdda2	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, N-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Phage tail proteins	8040014	3000268	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Phage tail proteins	8040011	3000268	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Phage tail proteins	8040011	3000268	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Phage tail proteins	8040014	3000268	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Phage tail proteins	8040014	3000268	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Phage tail proteins	8040011	3000268	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Phage tail proteins	8040011	3000268	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Phage tail proteins	8040014	3000268	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Phage tail proteins	8040014	3000268	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Phage tail proteins	8040011	3000268	SCOP2B (2022-06-29)
A	SCOP2 Family	Baseplate protein-like	8027632	4003106	SCOP2 (2022-06-29)
A	SCOP2 Family	Baseplate protein-like	8027635	4003106	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Phage tail proteins	8040011	3000268	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Phage tail proteins	8040014	3000268	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Me-amine-dh_H	e3cddF3	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Me-amine-dh_H	ECOD (v294.1)
F	CheW	e3cddF2	A: a/b three-layered sandwiches	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: CheW	ECOD (v294.1)
E	CheW	e3cddE2	A: a/b three-layered sandwiches	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: CheW	ECOD (v294.1)
D	CheW	e3cddD5	A: a/b three-layered sandwiches	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: CheW	ECOD (v294.1)
C	Me-amine-dh_H	e3cddC2	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Me-amine-dh_H	ECOD (v294.1)
C	CheW	e3cddC5	A: a/b three-layered sandwiches	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: CheW	ECOD (v294.1)
B	Me-amine-dh_H	e3cddB3	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Me-amine-dh_H	ECOD (v294.1)
B	Gp44-like_2nd	e3cddB2	A: a/b three-layered sandwiches	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Gp44-like_2nd	ECOD (v294.1)
B	CheW	e3cddB7	A: a/b three-layered sandwiches	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: CheW	ECOD (v294.1)
A	GpP_4th	e3cddA1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Aminomethyltransferase beta-barrel domain	F: GpP_4th	ECOD (v294.1)
A	TOBE	e3cddA4	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Aminomethyltransferase beta-barrel domain	F: TOBE	ECOD (v294.1)
A	GpP-like_1st	e3cddA5	A: a/b three-layered sandwiches	X: Rubredoxin-like	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: GpP-like_1st	ECOD (v294.1)
A	STN	e3cddA6	A: a/b three-layered sandwiches	X: Cation-proton antiporter	H: Cation-proton antiporter (CPA)	T: Cation-proton antiporter (CPA)	F: STN	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.30.300.10	Mainly Beta	Roll	Phage tail proteins - horseshoe like beta roll fold	Baseplate protein-like domain - beta roll fold	CATH (4.3.0)
F	3.55.50.10	Alpha Beta	3-Layer(bab) Sandwich	Phage tail protein beta-alpha-beta fold	Baseplate protein-like domains	CATH (4.3.0)
F	3.30.1920.10	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold	Baseplate protein-like domains - 2 layer sandwich fold	CATH (4.3.0)
E	2.30.300.10	Mainly Beta	Roll	Phage tail proteins - horseshoe like beta roll fold	Baseplate protein-like domain - beta roll fold	CATH (4.3.0)
E	3.55.50.10	Alpha Beta	3-Layer(bab) Sandwich	Phage tail protein beta-alpha-beta fold	Baseplate protein-like domains	CATH (4.3.0)
E	3.30.1920.10	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold	Baseplate protein-like domains - 2 layer sandwich fold	CATH (4.3.0)
D	2.30.300.10	Mainly Beta	Roll	Phage tail proteins - horseshoe like beta roll fold	Baseplate protein-like domain - beta roll fold	CATH (4.3.0)
D	3.55.50.10	Alpha Beta	3-Layer(bab) Sandwich	Phage tail protein beta-alpha-beta fold	Baseplate protein-like domains	CATH (4.3.0)
D	3.30.1920.10	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold	Baseplate protein-like domains - 2 layer sandwich fold	CATH (4.3.0)
C	2.30.300.10	Mainly Beta	Roll	Phage tail proteins - horseshoe like beta roll fold	Baseplate protein-like domain - beta roll fold	CATH (4.3.0)
C	3.55.50.10	Alpha Beta	3-Layer(bab) Sandwich	Phage tail protein beta-alpha-beta fold	Baseplate protein-like domains	CATH (4.3.0)
C	3.30.1920.10	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold	Baseplate protein-like domains - 2 layer sandwich fold	CATH (4.3.0)
B	2.30.300.10	Mainly Beta	Roll	Phage tail proteins - horseshoe like beta roll fold	Baseplate protein-like domain - beta roll fold	CATH (4.3.0)
B	3.55.50.10	Alpha Beta	3-Layer(bab) Sandwich	Phage tail protein beta-alpha-beta fold	Baseplate protein-like domains	CATH (4.3.0)
B	3.30.1920.10	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold	Baseplate protein-like domains - 2 layer sandwich fold	CATH (4.3.0)
A	2.30.300.10	Mainly Beta	Roll	Phage tail proteins - horseshoe like beta roll fold	Baseplate protein-like domain - beta roll fold	CATH (4.3.0)
A	3.55.50.10	Alpha Beta	3-Layer(bab) Sandwich	Phage tail protein beta-alpha-beta fold	Baseplate protein-like domains	CATH (4.3.0)
A	3.30.1920.10	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold	Baseplate protein-like domains - 2 layer sandwich fold	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF22255	Baseplate hub protein gp44-like, second domain (Gp44-like_2nd)	Baseplate hub protein gp44-like, second domain	This domain is found in Baseplate hub protein gp44 from Escherichia phage Mu and similar proteins found in tailed bacteriophages and proteobacterial prophages. This domain is located C-terminal to Pfam:PF21683 and N-terminal to Pfam:PF21929.	Domain
A, B, C, D, E A, B, C, D, E, F	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal (GpP-like_1st)	Mu phage baseplate assembly protein GpP-like, N-terminal	This domain is found at the N-terminal end of Mu phage baseplate assembly protein GpP from Shewanella oneidensis and similar proteins predominantly found in tailed bacteriophages and bacterial prophages.	Domain
A, B, C, D, E A, B, C, D, E, F	PF21929	Mu phage baseplate assembly protein GpP, fourth domain (GpP_4th)	Mu phage baseplate assembly protein GpP, fourth domain	This domain is found in Mu phage baseplate assembly protein GpP from Shewanella oneidensis (Swiss:Q8EDP4) and similar sequences found in tailed bacteriophages and prophages from proteobacteria. It is normally found associated with Pfam:PF21683.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR053982	Baseplate hub protein gp44/GpP-like, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR049354	Baseplate hub protein gp44-like, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR023399	Baseplate-like, two-layer sandwich fold	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR026276	Baseplate protein GpP	Family
A, B, C, D, E A, B, C, D, E, F	IPR053981	Baseplate hub protein gp44/GpP-like, second domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.