3CDD | pdb_00003cdd

Crystal structure of prophage MuSo2, 43 kDa tail protein from Shewanella oneidensis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d3cddf1	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, C-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
F	d3cddf2	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, N-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
E	d3cdde1	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, C-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
E	d3cdde2	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, N-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
E	d3cdde3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
D	d3cddd1	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, C-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
D	d3cddd2	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, N-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
C	d3cddc1	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, C-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
C	d3cddc2	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, N-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
B	d3cddb1	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, C-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
B	d3cddb2	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, N-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
A	d3cdda1	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, C-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)
A	d3cdda2	All beta proteins	Phage tail proteins	Phage tail proteins	Baseplate protein-like	Baseplate protein gpP, N-terminal domain	(Shewanella oneidensis MR-1 ) [TaxId: 211586 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Phage tail proteins	8040014	3000268	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Phage tail proteins	8040011	3000268	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Phage tail proteins	8040011	3000268	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Phage tail proteins	8040014	3000268	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Phage tail proteins	8040014	3000268	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Phage tail proteins	8040011	3000268	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Phage tail proteins	8040011	3000268	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Phage tail proteins	8040014	3000268	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Phage tail proteins	8040014	3000268	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Phage tail proteins	8040011	3000268	SCOP2B (2022-06-29)
A	SCOP2 Family	Baseplate protein-like	8027632	4003106	SCOP2 (2022-06-29)
A	SCOP2 Family	Baseplate protein-like	8027635	4003106	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Phage tail proteins	8040011	3000268	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Phage tail proteins	8040014	3000268	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	COG4379_4th_1	e3cddF2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: COG4379_4th_1	ECOD (1.6)
F	COG4379_1st	e3cddF3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: COG4379_1st	ECOD (1.6)
F	COG4379_2nd	e3cddF6	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: COG4379_2nd	ECOD (1.6)
F	COG4379_3rd_2	e3cddF7	A: a+b complex topology	X: C-terminal insertion domain in phage tail proteins (From Topology)	H: C-terminal insertion domain in phage tail proteins (From Topology)	T: C-terminal insertion domain in phage tail proteins	F: COG4379_3rd_2	ECOD (1.6)
E	COG4379_4th_1	e3cddE8	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: COG4379_4th_1	ECOD (1.6)
E	COG4379_1st	e3cddE2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: COG4379_1st	ECOD (1.6)
E	COG4379_2nd	e3cddE6	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: COG4379_2nd	ECOD (1.6)
E	COG4379_3rd_2	e3cddE7	A: a+b complex topology	X: C-terminal insertion domain in phage tail proteins (From Topology)	H: C-terminal insertion domain in phage tail proteins (From Topology)	T: C-terminal insertion domain in phage tail proteins	F: COG4379_3rd_2	ECOD (1.6)
D	COG4379_4th_1	e3cddD5	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: COG4379_4th_1	ECOD (1.6)
D	COG4379_1st	e3cddD7	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: COG4379_1st	ECOD (1.6)
D	COG4379_2nd	e3cddD6	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: COG4379_2nd	ECOD (1.6)
D	COG4379_3rd_2	e3cddD8	A: a+b complex topology	X: C-terminal insertion domain in phage tail proteins (From Topology)	H: C-terminal insertion domain in phage tail proteins (From Topology)	T: C-terminal insertion domain in phage tail proteins	F: COG4379_3rd_2	ECOD (1.6)
C	COG4379_4th_1	e3cddC5	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: COG4379_4th_1	ECOD (1.6)
C	COG4379_1st	e3cddC3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: COG4379_1st	ECOD (1.6)
C	COG4379_2nd	e3cddC2	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: COG4379_2nd	ECOD (1.6)
C	COG4379_3rd_2	e3cddC6	A: a+b complex topology	X: C-terminal insertion domain in phage tail proteins (From Topology)	H: C-terminal insertion domain in phage tail proteins (From Topology)	T: C-terminal insertion domain in phage tail proteins	F: COG4379_3rd_2	ECOD (1.6)
B	COG4379_4th_1	e3cddB2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: COG4379_4th_1	ECOD (1.6)
B	COG4379_1st	e3cddB3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: COG4379_1st	ECOD (1.6)
B	COG4379_2nd	e3cddB6	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: COG4379_2nd	ECOD (1.6)
B	COG4379_3rd_2	e3cddB7	A: a+b complex topology	X: C-terminal insertion domain in phage tail proteins (From Topology)	H: C-terminal insertion domain in phage tail proteins (From Topology)	T: C-terminal insertion domain in phage tail proteins	F: COG4379_3rd_2	ECOD (1.6)
A	COG4379_4th_1	e3cddA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: COG4379_4th_1	ECOD (1.6)
A	COG4379_1st	e3cddA5	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Phage tail proteins	F: COG4379_1st	ECOD (1.6)
A	COG4379_2nd	e3cddA6	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: COG4379_2nd	ECOD (1.6)
A	COG4379_3rd_2	e3cddA4	A: a+b complex topology	X: C-terminal insertion domain in phage tail proteins (From Topology)	H: C-terminal insertion domain in phage tail proteins (From Topology)	T: C-terminal insertion domain in phage tail proteins	F: COG4379_3rd_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.30.300.10	Mainly Beta	Roll	Phage tail proteins - horseshoe like beta roll fold	Baseplate protein-like domain - beta roll fold	CATH (4.3.0)
F	3.55.50.10	Alpha Beta	3-Layer(bab) Sandwich	Phage tail protein beta-alpha-beta fold	Baseplate protein-like domains	CATH (4.3.0)
F	3.30.1920.10	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold	Baseplate protein-like domains - 2 layer sandwich fold	CATH (4.3.0)
E	2.30.300.10	Mainly Beta	Roll	Phage tail proteins - horseshoe like beta roll fold	Baseplate protein-like domain - beta roll fold	CATH (4.3.0)
E	3.55.50.10	Alpha Beta	3-Layer(bab) Sandwich	Phage tail protein beta-alpha-beta fold	Baseplate protein-like domains	CATH (4.3.0)
E	3.30.1920.10	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold	Baseplate protein-like domains - 2 layer sandwich fold	CATH (4.3.0)
D	2.30.300.10	Mainly Beta	Roll	Phage tail proteins - horseshoe like beta roll fold	Baseplate protein-like domain - beta roll fold	CATH (4.3.0)
D	3.55.50.10	Alpha Beta	3-Layer(bab) Sandwich	Phage tail protein beta-alpha-beta fold	Baseplate protein-like domains	CATH (4.3.0)
D	3.30.1920.10	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold	Baseplate protein-like domains - 2 layer sandwich fold	CATH (4.3.0)
C	2.30.300.10	Mainly Beta	Roll	Phage tail proteins - horseshoe like beta roll fold	Baseplate protein-like domain - beta roll fold	CATH (4.3.0)
C	3.55.50.10	Alpha Beta	3-Layer(bab) Sandwich	Phage tail protein beta-alpha-beta fold	Baseplate protein-like domains	CATH (4.3.0)
C	3.30.1920.10	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold	Baseplate protein-like domains - 2 layer sandwich fold	CATH (4.3.0)
B	2.30.300.10	Mainly Beta	Roll	Phage tail proteins - horseshoe like beta roll fold	Baseplate protein-like domain - beta roll fold	CATH (4.3.0)
B	3.55.50.10	Alpha Beta	3-Layer(bab) Sandwich	Phage tail protein beta-alpha-beta fold	Baseplate protein-like domains	CATH (4.3.0)
B	3.30.1920.10	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold	Baseplate protein-like domains - 2 layer sandwich fold	CATH (4.3.0)
A	2.30.300.10	Mainly Beta	Roll	Phage tail proteins - horseshoe like beta roll fold	Baseplate protein-like domain - beta roll fold	CATH (4.3.0)
A	3.55.50.10	Alpha Beta	3-Layer(bab) Sandwich	Phage tail protein beta-alpha-beta fold	Baseplate protein-like domains	CATH (4.3.0)
A	3.30.1920.10	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold	Baseplate protein-like domains - 2 layer sandwich fold	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal (GpP-like_1st)	Mu phage baseplate assembly protein GpP-like, N-terminal	This domain is found at the N-terminal end of Mu phage baseplate assembly protein GpP from Shewanella oneidensis and similar proteins predominantly found in tailed bacteriophages and bacterial prophages.	Domain
A, B, C, D, E A, B, C, D, E, F	PF22255	Baseplate hub protein gp44-like, second domain (Gp44-like_2nd)	Baseplate hub protein gp44-like, second domain	This domain is found in Baseplate hub protein gp44 from Escherichia phage Mu and similar proteins found in tailed bacteriophages and proteobacterial prophages. This domain is located C-terminal to Pfam:PF21683 and N-terminal to Pfam:PF21929.	Domain
A, B, C, D, E A, B, C, D, E, F	PF21929	Mu phage baseplate assembly protein GpP, fourth domain (GpP_4th)	Mu phage baseplate assembly protein GpP, fourth domain	This domain is found in Mu phage baseplate assembly protein GpP from Shewanella oneidensis (Swiss:Q8EDP4) and similar sequences found in tailed bacteriophages and prophages from proteobacteria. It is normally found associated with Pfam:PF21683.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR053982	Baseplate hub protein gp44/GpP-like, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR049354	Baseplate hub protein gp44-like, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR023399	Baseplate-like, two-layer sandwich fold	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR026276	Baseplate protein GpP	Family
A, B, C, D, E A, B, C, D, E, F	IPR053981	Baseplate hub protein gp44/GpP-like, second domain	Domain