3C8N | pdb_00003c8n

Crystal structure of apo-FGD1 from Mycobacterium tuberculosis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d3c8nd_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Bacterial luciferase-like	automated matches	automated matches	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
C	d3c8nc_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Bacterial luciferase-like	automated matches	automated matches	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
B	d3c8nb_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Bacterial luciferase-like	automated matches	automated matches	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
A	d3c8na1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Bacterial luciferase-like	automated matches	automated matches	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
A	d3c8na2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Bacterial luciferase-like	8068097	3000585	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Bacterial luciferase-like	8068097	3000585	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Bacterial luciferase-like	8068097	3000585	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Bacterial luciferase-like	8068097	3000585	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Bac_luciferase	e3c8nD1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Bac_luciferase	ECOD (1.6)
C	Bac_luciferase	e3c8nC1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Bac_luciferase	ECOD (1.6)
B	Bac_luciferase	e3c8nB1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Bac_luciferase	ECOD (1.6)
A	Bac_luciferase,RNAse_Pc_like	e3c8nA1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Bac_luciferase,RNAse_Pc_like	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.20.20.30	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Luciferase-like domain	CATH (4.3.0)
C	3.20.20.30	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Luciferase-like domain	CATH (4.3.0)
B	3.20.20.30	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Luciferase-like domain	CATH (4.3.0)
A	3.20.20.30	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Luciferase-like domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00296	Luciferase-like monooxygenase (Bac_luciferase)	Luciferase-like monooxygenase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Probable F420-dependent glucose-6-phosphate dehydrogenase FGD1	oxidoreductase activity glucose-6-phosphate dehydrogenase (coenzyme F420) activity oxidoreductase activity, acting on CH-OH group of donors catalytic activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen organic acid binding binding ion binding anion binding coenzyme F420 binding carboxylic acid binding heterocyclic compound binding carbohydrate derivative binding small molecule binding	carbohydrate metabolic process primary metabolic process metabolic process cellular process cell redox homeostasis cellular homeostasis homeostatic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane external encapsulating structure cell wall peptidoglycan-based cell wall

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR011251	Luciferase-like domain	Domain
A, B, C, D	IPR019945	F420-dependent glucose-6-phosphate dehydrogenase-related	Family
A, B, C, D	IPR019944	F420-dependent glucose-6-phosphate dehydrogenase	Family
A, B, C, D	IPR036661	Luciferase-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR050564	F420-dependent glucose-6-phosphate dehydrogenase/mer	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.