3C1L | pdb_00003c1l

Crystal structure of an antioxidant defense protein (mlr4105) from mesorhizobium loti maff303099 at 2.00 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d3c1ll_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	automated matches	(Mesorhizobium japonicum MAFF 303099 ) [TaxId: 266835 ],	SCOPe (2.08)
K	d3c1lk_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	automated matches	(Mesorhizobium japonicum MAFF 303099 ) [TaxId: 266835 ],	SCOPe (2.08)
J	d3c1lj_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	automated matches	(Mesorhizobium japonicum MAFF 303099 ) [TaxId: 266835 ],	SCOPe (2.08)
I	d3c1li_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	automated matches	(Mesorhizobium japonicum MAFF 303099 ) [TaxId: 266835 ],	SCOPe (2.08)
H	d3c1lh_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	automated matches	(Mesorhizobium japonicum MAFF 303099 ) [TaxId: 266835 ],	SCOPe (2.08)
G	d3c1lg_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	automated matches	(Mesorhizobium japonicum MAFF 303099 ) [TaxId: 266835 ],	SCOPe (2.08)
F	d3c1lf_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	automated matches	(Mesorhizobium japonicum MAFF 303099 ) [TaxId: 266835 ],	SCOPe (2.08)
E	d3c1le_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	automated matches	(Mesorhizobium japonicum MAFF 303099 ) [TaxId: 266835 ],	SCOPe (2.08)
D	d3c1ld_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	automated matches	(Mesorhizobium japonicum MAFF 303099 ) [TaxId: 266835 ],	SCOPe (2.08)
C	d3c1lc_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	automated matches	(Mesorhizobium japonicum MAFF 303099 ) [TaxId: 266835 ],	SCOPe (2.08)
B	d3c1lb_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	automated matches	(Mesorhizobium japonicum MAFF 303099 ) [TaxId: 266835 ],	SCOPe (2.08)
A	d3c1la_	All alpha proteins	AhpD-like	AhpD-like	Atu0492-like	automated matches	(Mesorhizobium japonicum MAFF 303099 ) [TaxId: 266835 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	DUF3239	e3c1lL1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DUF3239	ECOD (v294.1)
K	DUF3239	e3c1lK1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DUF3239	ECOD (v294.1)
J	DUF3239	e3c1lJ1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DUF3239	ECOD (v294.1)
I	DUF3239	e3c1lI1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DUF3239	ECOD (v294.1)
H	DUF3239	e3c1lH1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DUF3239	ECOD (v294.1)
G	DUF3239	e3c1lG1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DUF3239	ECOD (v294.1)
F	DUF3239	e3c1lF1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DUF3239	ECOD (v294.1)
E	DUF3239	e3c1lE1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DUF3239	ECOD (v294.1)
D	DUF3239	e3c1lD1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DUF3239	ECOD (v294.1)
C	DUF3239	e3c1lC1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DUF3239	ECOD (v294.1)
B	DUF3239	e3c1lB1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DUF3239	ECOD (v294.1)
A	HRM	e3c1lA1	A: a/b three-layered sandwiches	X: Profilin-like	H: sensor domains	T: sensor domains	F: HRM	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
L	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
K	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
K	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
J	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
J	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
I	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
I	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
H	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
H	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
G	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
G	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
F	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
F	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
E	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
E	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
D	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
D	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
C	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
C	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
B	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
B	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)
A	1.20.5.810	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	AhpD-like	CATH (4.3.0)
A	1.20.1290.10	Mainly Alpha	Up-down Bundle	AhpD-like	AhpD-like	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Putative antioxidant defense protein Mlr4105	peroxidase activity oxidoreductase activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor catalytic activity peroxiredoxin activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR010195	Uncharacterised peroxidase-related	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR003779	Alkyl hydroperoxide reductase AhpD/CMD-like	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR029032	AhpD-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR004675	Alkylhydroperoxidase AhpD core	Domain