3BYW

Crystal structure of an extracellular domain of arabinofuranosyltransferase from Corynebacterium diphtheriae

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8093012	3000120	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8093012	3000120	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8093012	3000120	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8093012	3000120	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8093012	3000120	SCOP2B (2022-06-29)
F	SCOP2 Family	DIP0159 extracellular domain-like	8046186	4004938	SCOP2 (2022-06-29)
F	SCOP2 Superfamily	Concanavalin A-like lectins/glucanases	8093012	3000120	SCOP2 (2022-06-29)
G	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8093012	3000120	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8093012	3000120	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	PF17689	e3bywD1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: PF17689	ECOD (1.6)
E	PF17689	e3bywE1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: PF17689	ECOD (1.6)
A	PF17689	e3bywA1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: PF17689	ECOD (1.6)
B	PF17689	e3bywB1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: PF17689	ECOD (1.6)
C	PF17689	e3bywC1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: PF17689	ECOD (1.6)
F	PF17689	e3bywF1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: PF17689	ECOD (1.6)
G	PF17689	e3bywG1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: PF17689	ECOD (1.6)
H	PF17689	e3bywH1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: PF17689	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.60.120.610	Mainly Beta	Sandwich	Jelly Rolls	arabinofuranosyltransferase like domain	CATH (4.3.0)
E	2.60.120.610	Mainly Beta	Sandwich	Jelly Rolls	arabinofuranosyltransferase like domain	CATH (4.3.0)
A	2.60.120.610	Mainly Beta	Sandwich	Jelly Rolls	arabinofuranosyltransferase like domain	CATH (4.3.0)
B	2.60.120.610	Mainly Beta	Sandwich	Jelly Rolls	arabinofuranosyltransferase like domain	CATH (4.3.0)
C	2.60.120.610	Mainly Beta	Sandwich	Jelly Rolls	arabinofuranosyltransferase like domain	CATH (4.3.0)
F	2.60.120.610	Mainly Beta	Sandwich	Jelly Rolls	arabinofuranosyltransferase like domain	CATH (4.3.0)
G	2.60.120.610	Mainly Beta	Sandwich	Jelly Rolls	arabinofuranosyltransferase like domain	CATH (4.3.0)
H	2.60.120.610	Mainly Beta	Sandwich	Jelly Rolls	arabinofuranosyltransferase like domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF17689	Arabinosyltransferase concanavalin like domain (Arabino_trans_N)	Arabinosyltransferase concanavalin like domain	Arabinosyltransferase is involved in arabinogalactan (AG) biosynthesis pathway in mycobacteria. AG is a component of the macromolecular assembly of the mycolyl-AG-peptidoglycan complex of the cell wall. This enzyme has important clinical applicatio ...	Arabinosyltransferase is involved in arabinogalactan (AG) biosynthesis pathway in mycobacteria. AG is a component of the macromolecular assembly of the mycolyl-AG-peptidoglycan complex of the cell wall. This enzyme has important clinical applications as it is believed to be the target of the antimycobacterial drug Ethambutol [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Putative arabinofuranosyltransferase	cation binding ion binding binding metal ion binding small molecule binding pentosyltransferase activity arabinosyltransferase activity glycosyltransferase activity transferase activity catalytic activity	cellular component biogenesis peptidoglycan-based cell wall biogenesis cell wall biogenesis cell wall organization or biogenesis Actinobacterium-type cell wall biogenesis cellular process cellular component organization or biogenesis cellular component organization cell wall organization external encapsulating structure organization	cell periphery plasma membrane membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR040920	Arabinosyltransferas, concanavalin like domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR032731	Arabinosyltransferase, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR007680	Arabinofuranosyltransferase, central domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR042486	Arabinosyltransferase, C-terminal, subdomain 2	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR027451	Arabinofuranosyltransferase, domain 1	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.