3BXY | pdb_00003bxy

Crystal structure of tetrahydrodipicolinate N-succinyltransferase from E. coli

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3bxya1	All beta proteins	Single-stranded left-handed beta-helix	Trimeric LpxA-like enzymes	Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD	Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD	(Escherichia coli O157:H7 ) [TaxId: 83334 ],	SCOPe (2.08)
A	d3bxya2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Escherichia coli O157:H7 ) [TaxId: 83334 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF3239	e3bxyA1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DUF3239	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.166.10	Mainly Alpha	Orthogonal Bundle	Tetrahydrodipicolinate-N-succinyltransferase	Chain A, domain 1	CATH (4.3.0)
A	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF14805	Tetrahydrodipicolinate N-succinyltransferase N-terminal (THDPS_N_2)	Tetrahydrodipicolinate N-succinyltransferase N-terminal	This is the N-terminal domain of 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [1].	Domain
A	PF14602	Hexapeptide repeat of succinyl-transferase (Hexapep_2)	Hexapeptide repeat of succinyl-transferase	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	N-succinyltransferase activity acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity succinyltransferase activity catalytic activity N-acyltransferase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR023180	Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1	Domain
A	IPR011004	Trimeric LpxA-like superfamily	Homologous Superfamily
A	IPR005664	Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family	Family
A	IPR018357	Hexapeptide transferase, conserved site	Conserved Site
A	IPR037133	Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily	Homologous Superfamily
A	IPR001451	Hexapeptide repeat	Repeat

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.