3BS6 | pdb_00003bs6

1.8 Angstrom crystal structure of the periplasmic domain of the membrane insertase YidC

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Galactose mutarotase-like	8101843	3000035	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Galactose mutarotase-like	8101843	3000035	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	DUF3239	e3bs6B1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: DUF3239	ECOD (v294.1)
A	NUDIX	e3bs6A1	A: a/b three-layered sandwiches	X: Ribonuclease H-like	H: HD-domain/PDEase-like	T: HD-domain/PDEase-like	F: NUDIX	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.70.98.90	Mainly Beta	Distorted Sandwich	Beta-galactosidase	Chain A, domain 5	CATH (4.3.0)
A	2.70.98.90	Mainly Beta	Distorted Sandwich	Beta-galactosidase	Chain A, domain 5	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF14849	YidC periplasmic domain (YidC_periplas)	YidC periplasmic domain	This is the periplasmic domain of YidC, a bacterial membrane protein which is required for the insertion and assembly of inner membrane proteins [1,2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Inner membrane protein oxaA	membrane insertase activity protein carrier activity molecular carrier activity	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis protein folding biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process gene expression cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis protein folding biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane establishment of localization localization macromolecule localization intracellular protein localization protein insertion into membrane transport protein transport by the Sec complex transmembrane transport protein transmembrane transport protein transport	cellular anatomical structure membrane cell periphery plasma membrane protein-containing complex cell envelope Sec protein transport complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR047196	Membrane insertase YidC/ALB, C-terminal	Domain
A, B	IPR019998	Membrane insertase YidC	Family
A, B	IPR001708	Membrane insertase YidC/ALB3/OXA1/COX18	Family
A, B	IPR028053	Membrane insertase YidC, N-terminal	Domain
A, B	IPR028055	Membrane insertase YidC/Oxa/ALB, C-terminal	Domain
A, B	IPR038221	YidC, periplasmic domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.