3BQ7 | pdb_00003bq7

SAM domain of Diacylglycerol Kinase delta1 (E35G)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d3bq7f_	All alpha proteins	SAM domain-like	SAM/Pointed domain	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d3bq7e1	All alpha proteins	SAM domain-like	SAM/Pointed domain	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d3bq7e2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d3bq7d_	All alpha proteins	SAM domain-like	SAM/Pointed domain	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d3bq7c1	All alpha proteins	SAM domain-like	SAM/Pointed domain	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d3bq7c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d3bq7b_	All alpha proteins	SAM domain-like	SAM/Pointed domain	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d3bq7a1	All alpha proteins	SAM domain-like	SAM/Pointed domain	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d3bq7a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	SAM/Pointed domain	8079667	3000479	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	SAM/Pointed domain	8079667	3000479	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	SAM/Pointed domain	8079667	3000479	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SAM/Pointed domain	8079667	3000479	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SAM/Pointed domain	8079667	3000479	SCOP2B (2022-06-29)
A	SCOP2 Family	SAM (sterile alpha motif) domain	8079666	4001022	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	SAM/Pointed domain	8079667	3000479	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	SAM_1	e3bq7F1	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: SAM_1	ECOD (1.6)
E	SAM_1	e3bq7E1	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: SAM_1	ECOD (1.6)
D	SAM_1	e3bq7D1	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: SAM_1	ECOD (1.6)
C	SAM_1	e3bq7C1	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: SAM_1	ECOD (1.6)
B	SAM_1	e3bq7B1	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: SAM_1	ECOD (1.6)
A	SAM_1	e3bq7A1	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: SAM_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	1.10.150.50	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
E	1.10.150.50	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
D	1.10.150.50	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
C	1.10.150.50	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
B	1.10.150.50	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
A	1.10.150.50	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF07647	SAM domain (Sterile alpha motif) (SAM_2)	SAM domain (Sterile alpha motif)		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Diacylglycerol kinase delta	binding lipid binding diacylglycerol binding protein heterodimerization activity protein binding protein dimerization activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding binding lipid binding diacylglycerol binding protein heterodimerization activity protein binding protein dimerization activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding kinase binding enzyme binding identical protein binding protein homodimerization activity kinase activity lipid kinase activity transferase activity ATP-dependent diacylglycerol kinase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups cation binding transition metal ion binding zinc ion binding metal ion binding	phosphatidic acid biosynthetic process glycerophospholipid biosynthetic process phosphatidic acid metabolic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process glycerolipid metabolic process phosphatidic acid biosynthetic process glycerophospholipid biosynthetic process phosphatidic acid metabolic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process glycerolipid metabolic process metabolic process cellular process phosphorus metabolic process lipid metabolic process neutral lipid metabolic process lipid catabolic process catabolic process neutral lipid catabolic process glycerolipid catabolic process acylglycerol catabolic process diacylglycerol metabolic process acylglycerol metabolic process diacylglycerol catabolic process localization import into cell transport endocytosis establishment of localization vesicle-mediated transport establishment of protein localization nitrogen compound transport protein transport macromolecule localization intracellular protein localization lipid phosphorylation phosphorylation lipid modification cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction cell surface receptor protein tyrosine kinase signaling pathway cell communication positive regulation of response to stimulus positive regulation of ERBB signaling pathway regulation of epidermal growth factor receptor signaling pathway epidermal growth factor receptor signaling pathway signal transduction enzyme-linked receptor protein signaling pathway positive regulation of cellular process positive regulation of epidermal growth factor receptor signaling pathway regulation of biological process regulation of ERBB signaling pathway regulation of signaling cell surface receptor signaling pathway biological regulation regulation of response to stimulus ERBB signaling pathway regulation of cell communication positive regulation of signaling multicellular organismal process regulation of body fluid levels wound healing cell activation hemostasis blood coagulation response to stress coagulation regulation of biological quality response to wounding platelet activation negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process negative regulation of cell communication intracellular signal transduction regulation of intracellular signal transduction negative regulation of cellular process intracellular signaling cassette negative regulation of phospholipase C/protein kinase C signal transduction negative regulation of response to stimulus negative regulation of signal transduction phospholipase C/protein kinase C signal transduction phospholipase C-activating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway regulation of localization positive regulation of cellular component organization regulation of cellular component organization cellular component organization positive regulation of endocytosis clathrin-dependent endocytosis cellular component organization or biogenesis positive regulation of receptor-mediated endocytosis regulation of endocytosis regulation of transport regulation of receptor-mediated endocytosis regulation of vesicle-mediated transport positive regulation of transport positive regulation of clathrin-dependent endocytosis receptor-mediated endocytosis regulation of clathrin-dependent endocytosis	cellular anatomical structure clathrin-coated pit membrane endomembrane system intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle intracellular vesicle cellular anatomical structure clathrin-coated pit membrane endomembrane system intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle intracellular vesicle intracellular membrane-bounded organelle vesicle nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR001849	Pleckstrin homology domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR000756	Diacylglycerol kinase, accessory domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR011993	PH-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR016064	NAD kinase/diacylglycerol kinase-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR037606	Diacylglycerol kinase delta, SAM domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR002219	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR017438	Inorganic polyphosphate/ATP-NAD kinase, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR054474	Diacylglycerol kinase eta/delta/kappa, helical domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR001206	Diacylglycerol kinase, catalytic domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR037607	Diacylglycerol kinase	Family
A, B, C, D, E A, B, C, D, E, F	IPR047478	Diacylglycerol kinase delta, first protein kinase C conserved region 1	Domain
A, B, C, D, E A, B, C, D, E, F	IPR047477	Diacylglycerol kinase delta, second protein kinase C conserved region 1	Domain
A, B, C, D, E A, B, C, D, E, F	IPR046349	C1-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR001660	Sterile alpha motif domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F	Pharos: Q16760	congestive heart failure gastric carcinoma nephrolithiasis pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia ulcerative colitis Crohn disease inflammatory bowel disease open-angle glaucoma rheumatoid arthritis diabetes mellitus lung carcinoma osteosarcoma type 2 diabetes mellitus

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.