3BID

Crystal structure of the NMB1088 protein from Neisseria meningitidis. Northeast Structural Genomics Consortium target MR91

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3bida1	Alpha and beta proteins (a+b)	YegP-like	YegP-like	YegP-like	Uncharacterized protein NMB1088	(Neisseria meningitidis MC58 ) [TaxId: 122586 ],	SCOPe (2.08)
A	d3bida2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Neisseria meningitidis MC58 ) [TaxId: 122586 ],	SCOPe (2.08)
B	d3bidb2	Alpha and beta proteins (a+b)	YegP-like	YegP-like	YegP-like	Uncharacterized protein NMB1088	(Neisseria meningitidis MC58 ) [TaxId: 122586 ],	SCOPe (2.08)
B	d3bidb3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Neisseria meningitidis MC58 ) [TaxId: 122586 ],	SCOPe (2.08)
C	d3bidc2	Alpha and beta proteins (a+b)	YegP-like	YegP-like	YegP-like	Uncharacterized protein NMB1088	(Neisseria meningitidis MC58 ) [TaxId: 122586 ],	SCOPe (2.08)
C	d3bidc3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Neisseria meningitidis MC58 ) [TaxId: 122586 ],	SCOPe (2.08)
D	d3bidd2	Alpha and beta proteins (a+b)	YegP-like	YegP-like	YegP-like	Uncharacterized protein NMB1088	(Neisseria meningitidis MC58 ) [TaxId: 122586 ],	SCOPe (2.08)
D	d3bidd3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Neisseria meningitidis MC58 ) [TaxId: 122586 ],	SCOPe (2.08)
E	d3bide2	Alpha and beta proteins (a+b)	YegP-like	YegP-like	YegP-like	Uncharacterized protein NMB1088	(Neisseria meningitidis MC58 ) [TaxId: 122586 ],	SCOPe (2.08)
E	d3bide3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Neisseria meningitidis MC58 ) [TaxId: 122586 ],	SCOPe (2.08)
F	d3bidf2	Alpha and beta proteins (a+b)	YegP-like	YegP-like	YegP-like	Uncharacterized protein NMB1088	(Neisseria meningitidis MC58 ) [TaxId: 122586 ],	SCOPe (2.08)
F	d3bidf3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Neisseria meningitidis MC58 ) [TaxId: 122586 ],	SCOPe (2.08)
G	d3bidg2	Alpha and beta proteins (a+b)	YegP-like	YegP-like	YegP-like	Uncharacterized protein NMB1088	(Neisseria meningitidis MC58 ) [TaxId: 122586 ],	SCOPe (2.08)
G	d3bidg3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Neisseria meningitidis MC58 ) [TaxId: 122586 ],	SCOPe (2.08)
H	d3bidh2	Alpha and beta proteins (a+b)	YegP-like	YegP-like	YegP-like	Uncharacterized protein NMB1088	(Neisseria meningitidis MC58 ) [TaxId: 122586 ],	SCOPe (2.08)
H	d3bidh3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Neisseria meningitidis MC58 ) [TaxId: 122586 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YegP-like	8026883	4001754	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YegP-like	8039262	3000336	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	YegP-like	8039262	3000336	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	YegP-like	8039262	3000336	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	YegP-like	8039262	3000336	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	YegP-like	8039262	3000336	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	YegP-like	8039262	3000336	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	YegP-like	8039262	3000336	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	YegP-like	8039262	3000336	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF1508_1	e3bidA1	A: mixed a+b and a/b	X: YegP-like (From Topology)	H: YegP-like (From Topology)	T: YegP-like	F: DUF1508_1	ECOD (1.6)
B	DUF1508_1	e3bidB1	A: mixed a+b and a/b	X: YegP-like (From Topology)	H: YegP-like (From Topology)	T: YegP-like	F: DUF1508_1	ECOD (1.6)
C	DUF1508_1	e3bidC1	A: mixed a+b and a/b	X: YegP-like (From Topology)	H: YegP-like (From Topology)	T: YegP-like	F: DUF1508_1	ECOD (1.6)
D	DUF1508_1	e3bidD1	A: mixed a+b and a/b	X: YegP-like (From Topology)	H: YegP-like (From Topology)	T: YegP-like	F: DUF1508_1	ECOD (1.6)
E	DUF1508_1	e3bidE1	A: mixed a+b and a/b	X: YegP-like (From Topology)	H: YegP-like (From Topology)	T: YegP-like	F: DUF1508_1	ECOD (1.6)
F	DUF1508_1	e3bidF1	A: mixed a+b and a/b	X: YegP-like (From Topology)	H: YegP-like (From Topology)	T: YegP-like	F: DUF1508_1	ECOD (1.6)
G	DUF1508_1	e3bidG1	A: mixed a+b and a/b	X: YegP-like (From Topology)	H: YegP-like (From Topology)	T: YegP-like	F: DUF1508_1	ECOD (1.6)
H	DUF1508_1	e3bidH1	A: mixed a+b and a/b	X: YegP-like (From Topology)	H: YegP-like (From Topology)	T: YegP-like	F: DUF1508_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.160.160	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain	YegP-like	CATH (4.3.0)
B	3.30.160.160	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain	YegP-like	CATH (4.3.0)
C	3.30.160.160	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain	YegP-like	CATH (4.3.0)
D	3.30.160.160	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain	YegP-like	CATH (4.3.0)
E	3.30.160.160	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain	YegP-like	CATH (4.3.0)
F	3.30.160.160	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain	YegP-like	CATH (4.3.0)
G	3.30.160.160	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain	YegP-like	CATH (4.3.0)
H	3.30.160.160	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain	YegP-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF07411	Domain of unknown function (DUF1508) (DUF1508)	Domain of unknown function (DUF1508)	This family represents a series of bacterial domains of unknown function of around 50 residues in length. Members of this family are often found as tandem repeats and in some cases represent the whole protein. All member proteins are described as bei ...	This family represents a series of bacterial domains of unknown function of around 50 residues in length. Members of this family are often found as tandem repeats and in some cases represent the whole protein. All member proteins are described as being hypothetical.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036913	YegP-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR010879	Domain of unknown function DUF1508	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.