3BH3 | pdb_00003bh3

Crystal structure of acetoacetate decarboxylase from Chromobacterium violaceum in complex with acetyl acetone Schiff base intermediate

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d3bh3d_	Alpha and beta proteins (a+b)	Acetoacetate decarboxylase-like	Acetoacetate decarboxylase-like	automated matches	automated matches	(Chromobacterium violaceum ATCC 12472 ) [TaxId: 243365 ],	SCOPe (2.08)
C	d3bh3c_	Alpha and beta proteins (a+b)	Acetoacetate decarboxylase-like	Acetoacetate decarboxylase-like	automated matches	automated matches	(Chromobacterium violaceum ATCC 12472 ) [TaxId: 243365 ],	SCOPe (2.08)
B	d3bh3b_	Alpha and beta proteins (a+b)	Acetoacetate decarboxylase-like	Acetoacetate decarboxylase-like	automated matches	automated matches	(Chromobacterium violaceum ATCC 12472 ) [TaxId: 243365 ],	SCOPe (2.08)
A	d3bh3a_	Alpha and beta proteins (a+b)	Acetoacetate decarboxylase-like	Acetoacetate decarboxylase-like	automated matches	automated matches	(Chromobacterium violaceum ATCC 12472 ) [TaxId: 243365 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Acetoacetate decarboxylase-like	8086271	3000322	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Acetoacetate decarboxylase-like	8086271	3000322	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Acetoacetate decarboxylase-like	8086271	3000322	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Acetoacetate decarboxylase-like	8086271	3000322	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	IL7	e3bh3D1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: IL7	ECOD (v294.1)
C	IL7	e3bh3C1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: IL7	ECOD (v294.1)
B	IL7	e3bh3B1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: IL7	ECOD (v294.1)
A	IL7	e3bh3A1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: IL7	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.40.400.10	Mainly Beta	Beta Barrel	Acetoacetate decarboxylase-like	Acetoacetate decarboxylase-like	CATH (4.3.0)
C	2.40.400.10	Mainly Beta	Beta Barrel	Acetoacetate decarboxylase-like	Acetoacetate decarboxylase-like	CATH (4.3.0)
B	2.40.400.10	Mainly Beta	Beta Barrel	Acetoacetate decarboxylase-like	Acetoacetate decarboxylase-like	CATH (4.3.0)
A	2.40.400.10	Mainly Beta	Beta Barrel	Acetoacetate decarboxylase-like	Acetoacetate decarboxylase-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF06314	Acetoacetate decarboxylase (ADC) (ADC)	Acetoacetate decarboxylase (ADC)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Acetoacetate decarboxylase	acetoacetate decarboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR023653	Acetoacetate decarboxylase, bacterial	Family
A, B, C, D	IPR010451	Acetoacetate decarboxylase	Family
A, B, C, D	IPR023375	Acetoacetate decarboxylase domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.