3AUP | pdb_00003aup

Crystal structure of Basic 7S globulin from soybean

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d3aupd_	All beta proteins	Acid proteases	Acid proteases	automated matches	automated matches	(Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
C	d3aupc_	All beta proteins	Acid proteases	Acid proteases	automated matches	automated matches	(Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
B	d3aupb_	All beta proteins	Acid proteases	Acid proteases	automated matches	automated matches	(Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
A	d3aupa_	All beta proteins	Acid proteases	Acid proteases	automated matches	automated matches	(Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Acid proteases	8087232	3001059	SCOP2B (2022-06-29)
C	SCOP2 Family	Pepsin-like	8087231	4002301	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Acid proteases	8087232	3001059	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Acid proteases	8087232	3001059	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Acid proteases	8087232	3001059	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	P53_tetramer	e3aupD1	A: alpha bundles	X: beta-clip	H: p53 tetramerization domain	T: p53 tetramerization domain	F: P53_tetramer	ECOD (develop294)
C	P53_tetramer	e3aupC1	A: alpha bundles	X: beta-clip	H: p53 tetramerization domain	T: p53 tetramerization domain	F: P53_tetramer	ECOD (develop294)
B	P53_tetramer	e3aupB1	A: alpha bundles	X: beta-clip	H: p53 tetramerization domain	T: p53 tetramerization domain	F: P53_tetramer	ECOD (develop294)
A	P53_tetramer	e3aupA1	A: alpha bundles	X: beta-clip	H: p53 tetramerization domain	T: p53 tetramerization domain	F: P53_tetramer	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)
C	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)
B	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)
A	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF14541	Xylanase inhibitor C-terminal (TAXi_C)	Xylanase inhibitor C-terminal	This domain is found C-terminal in some aspartic proteinases and in xylanase inhibitors. The activity of these proteins is vital for plant-survival as xylanase produced by phytopathogens destroys plant cells. In TAXI-type inhibitors, this domain is i ...	This domain is found C-terminal in some aspartic proteinases and in xylanase inhibitors. The activity of these proteins is vital for plant-survival as xylanase produced by phytopathogens destroys plant cells. In TAXI-type inhibitors, this domain is important for the differences in xylanase specificity [1-3].	Domain
A, B, C, D	PF14543	Xylanase inhibitor N-terminal (TAXi_N)	Xylanase inhibitor N-terminal	This domain is found N-terminal in some aspartic proteinases and in xylanase inhibitors. The activity of these proteins is vital for plant-survival as xylanase produced by phytopathogens destroys plant cells [1-3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Basic 7S globulin	aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity aspartic-type endopeptidase activity catalytic activity endopeptidase activity nutrient reservoir activity identical protein binding protein binding binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR032861	Xylanase inhibitor, N-terminal	Domain
A, B, C, D	IPR001461	Aspartic peptidase A1	Family
A, B, C, D	IPR033121	Peptidase family A1 domain	Domain
A, B, C, D	IPR021109	Aspartic peptidase domain superfamily	Homologous Superfamily
A, B, C, D	IPR032799	Xylanase inhibitor, C-terminal	Domain
A, B, C, D	IPR033868	Xylanase inhibitor I-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.