3AQE | pdb_00003aqe

Crystal structure of the extracellular domain of human RAMP2

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	RAMP1-like	8054001	3002261	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RAMP1-like	8054001	3002261	SCOP2B (2022-06-29)
D	SCOP2 Family	RAMP1-like	8046628	4005201	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	RAMP1-like	8054001	3002261	SCOP2 (2022-06-29)
E	SCOP2B Superfamily	RAMP1-like	8054001	3002261	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	RAMP1-like	8054001	3002261	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RAMP1-like	8054001	3002261	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	VHP	e3aqeB1	A: a/b three-layered sandwiches	X: Alpha-beta plaits	H: Notch heterodimerization domain	T: Notch heterodimerization domain	F: VHP	ECOD (v294.1)
C	VHP	e3aqeC1	A: a/b three-layered sandwiches	X: Alpha-beta plaits	H: Notch heterodimerization domain	T: Notch heterodimerization domain	F: VHP	ECOD (v294.1)
D	VHP	e3aqeD1	A: a/b three-layered sandwiches	X: Alpha-beta plaits	H: Notch heterodimerization domain	T: Notch heterodimerization domain	F: VHP	ECOD (v294.1)
E	VHP	e3aqeE1	A: a/b three-layered sandwiches	X: Alpha-beta plaits	H: Notch heterodimerization domain	T: Notch heterodimerization domain	F: VHP	ECOD (v294.1)
F	VHP	e3aqeF1	A: a/b three-layered sandwiches	X: Alpha-beta plaits	H: Notch heterodimerization domain	T: Notch heterodimerization domain	F: VHP	ECOD (v294.1)
A	VHP	e3aqeA1	A: a/b three-layered sandwiches	X: Alpha-beta plaits	H: Notch heterodimerization domain	T: Notch heterodimerization domain	F: VHP	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.150.510	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
C	1.10.150.510	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
D	1.10.150.510	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
E	1.10.150.510	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
F	1.10.150.510	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
A	1.10.150.510	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF04901	Receptor activity modifying family (RAMP)	Receptor activity modifying family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Receptor activity-modifying protein 2	molecular transducer activity coreceptor activity signaling receptor activity calcitonin family binding binding adrenomedullin binding peptide hormone binding hormone binding calcitonin family receptor activity peptide receptor activity adrenomedullin receptor activity G protein-coupled receptor activity G protein-coupled peptide receptor activity transmembrane signaling receptor activity	developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development system process circulatory system process regulation of blood pressure biological regulation regulation of biological quality blood circulation developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development system process circulatory system process regulation of blood pressure biological regulation regulation of biological quality blood circulation localization import into cell receptor internalization transport cellular process receptor-mediated endocytosis endocytosis establishment of localization vesicle-mediated transport blood vessel morphogenesis tube development angiogenesis vasculature development anatomical structure morphogenesis tube morphogenesis anatomical structure formation involved in morphogenesis blood vessel development regulation of biosynthetic process regulation of biological process regulation of cellular process positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process regulation of developmental process cellular developmental process regulation of vasculogenesis regulation of cell differentiation vasculogenesis positive regulation of developmental process positive regulation of cell differentiation cell differentiation positive regulation of vasculogenesis establishment of protein localization protein transport macromolecule localization intracellular protein localization smooth muscle cell differentiation cell development muscle cell differentiation muscle structure development vascular associated smooth muscle cell differentiation muscle cell development vascular associated smooth muscle cell development protein localization to cell periphery cellular localization protein localization to plasma membrane localization within membrane protein localization to membrane cellular response to stimulus cellular response to endogenous stimulus cellular response to chemical stimulus response to stimulus response to hormone response to endogenous stimulus response to chemical cellular response to hormone stimulus sprouting angiogenesis negative regulation of vascular permeability regulation of vascular permeability vascular process in circulatory system signaling adenylate cyclase-activating G protein-coupled receptor signaling pathway cell communication adenylate cyclase-modulating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway signal transduction bicellular tight junction assembly tight junction organization apical junction assembly cellular component organization cellular component biogenesis cell junction organization cellular component assembly cell junction assembly tight junction assembly cellular component organization or biogenesis cell-cell junction assembly cell-cell junction organization intracellular transport establishment of localization in cell intracellular protein transport regulation of signaling regulation of signal transduction regulation of response to stimulus regulation of cell communication regulation of G protein-coupled receptor signaling pathway adrenomedullin receptor signaling pathway calcitonin family receptor signaling pathway regulation of vasculature development regulation of multicellular organismal process regulation of anatomical structure morphogenesis regulation of multicellular organismal development positive regulation of angiogenesis positive regulation of vasculature development regulation of angiogenesis positive regulation of multicellular organismal process extracellular matrix organization basement membrane assembly extracellular matrix assembly basement membrane organization extracellular structure organization external encapsulating structure organization amylin receptor signaling pathway amylin receptor 2 signaling pathway monoatomic ion transport monoatomic cation transport calcium ion transport metal ion transport negative regulation of endothelial cell apoptotic process negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process endothelial cell apoptotic process apoptotic process programmed cell death regulation of endothelial cell apoptotic process adherens junction organization adherens junction assembly cellular response to growth factor stimulus cellular response to vascular endothelial growth factor stimulus response to growth factor	cellular anatomical structure clathrin-coated pit membrane endomembrane system cell surface cell periphery plasma membrane intracellular anatomical structure cytoplasm protein-containing complex plasma membrane protein complex membrane protein complex G protein-coupled receptor dimeric complex adrenomedullin receptor complex cellular anatomical structure clathrin-coated pit membrane endomembrane system cell surface cell periphery plasma membrane intracellular anatomical structure cytoplasm protein-containing complex plasma membrane protein complex membrane protein complex G protein-coupled receptor dimeric complex adrenomedullin receptor complex plasma membrane signaling receptor complex G protein-coupled receptor complex signaling receptor complex calcitonin family receptor complex membrane-bounded organelle intracellular organelle organelle lytic vacuole vacuole intracellular membrane-bounded organelle lysosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR006985	Receptor activity modifying protein	Family
A, B, C, D, E A, B, C, D, E, F	IPR038126	RAMP domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F	Pharos: O60895	adenocarcinoma adult acute respiratory distress syndrome tubular adenocarcinoma Weight Gain granular cell carcinoma psoriasis glioblastoma large cell medulloblastoma lung cancer non-small cell lung carcinoma cribriform carcinoma lung adenocarcinoma lung carcinoma medulloblastoma primitive neuroectodermal tumor adenocarcinoma adult acute respiratory distress syndrome tubular adenocarcinoma Weight Gain granular cell carcinoma psoriasis glioblastoma large cell medulloblastoma lung cancer non-small cell lung carcinoma cribriform carcinoma lung adenocarcinoma lung carcinoma medulloblastoma primitive neuroectodermal tumor cribriform carcinoma of breast invasive ductal breast carcinoma lung benign neoplasm nephrosclerosis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.